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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G17970 | AT | Annotation by Michelle Graham. TAIR10: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr2:7819116-7821276 REVERSE LENGTH=507 | SoyBase | E_val: 0 | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016706 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | SoyBase | N/A | ISS |
| KOG4176 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR13069 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PTHR13069:SF2 | Panther | gb def: cg17807-pa [drosophila melanogaster] | JGI | ISS | |
| PF03171 | PFAM | 2OG-Fe(II) oxygenase superfamily | JGI | ISS | |
| UniRef100_I1M9B6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M9B6_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9SL49 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein n=2 Tax=Arabidopsis thaliana RepID=Q9SL49_ARATH | SoyBase | E_val: 5.00E-180 | ISS |
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Glyma14g12390 not represented in the dataset |
Glyma14g12390 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g33610 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g106000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g12390.2 sequence type=transcript gene model=Glyma14g12390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AACCAAAACTTTATAAAGCAAATTAAGTGTGTGTGCATCTTAAAGGAAGGAAGGAAGCAGAGTATCTTCTCTTCTTCTTGTGCAGTCTCTACTTCCTCTCTGCGTTTCTCTCGTCTCCGATTCCACCCTCCGAGTTGACTCAGTGCGCCATGGACGACCAAGAACAACACCGACAACCTCAACCCAACAGCAACAACGGTTCCAACGCCGACCCTTTTCTCCTCAACTACAGCACCTCCGATCTCCGAACCGCTTCAGAGTTTCTCGCCACGTGGCTCCCTTTCCTCTCACGAGATCTCTGCACTCGATGCACCCTGTCCCTCTCCGATCGCATCCGCTCCATCGACCCAGGTGAAGCGCCTCAAAACGAAATCCCCAGTGACCAAAACGACGTCGACGTGGAGGATAACTGCGACAACTGCGACGCGCATTCTCTCGGGAGTTGGAAGGACGGGGCGGAGGTGAATAACTCCAATGTGGAGACTCCGAGCCAGAGGATTTCATGGGCCGACATGGCCCAAGAAGATGACGAGTTCGGCGACGAAGAAGACAGCAACAATGGCGGGAATTTTGCGGTGGGTGATTCGAATGCTTTCTCTCATGTGGCTAAGGTTGTGGCTGAGAAGCCTACTCTGCCGAGGGAGCAGAGGGAGTACATTAGGTTCATGAATGTGAGGCGAAAGAAGGACTTTATCTGCTTTGAGAGGGTTAACGGGAAGCTTGTGAACATTCTTGAAGGGCTTGAGCTGCACACTGGGATTTTCAGTGCTGCTGAGCAGAAGAGGATTGTTAATTATGTCGCCTCGTTGCAGGAAATGGGGAGAAAGGGGGAATTGAAAGAGCAAACGTTTTCAGCTCCCCAAAAGTGGATGAGGGGTAAGGGACGCCAAACCATCCAATTTGGGTGCTGTTACAATTATGCAGATAGAGATGGTAACCCACCTGGTATTCTTGGGAATGGAATGGTTGATCCTATACCTGCTCTTTTCAAGGTCATTATTCGACGTCTTATCAAGTGGCATGTACTCCCTCCTACTTGTGTGCCAGATAGTTGCATTGTTAATATCTATGAAGAAGGGGACTGTATACCTCCACATATAGATAACCATGACTTTGTTCGACCATTTTGCACTGTATCATTTCTTAGTGAGTGCAATATAGTTTTTGGATCAAACTTAAAAATTGTAGGCCCTGGTGAATTTGATGGCTCAATTGCTATTCCGTTACCTATGGGATCTGTACTTGTCTTGAACGGAAATGGAGCTGATGTAGCTAAGCATTGCGTGCCTGCAGTTCCTACCAAAAGGATATCAATCACATTTAGAAGAATGGATGTGTCCAAGCGGCCTTTTGGGTATGTTCCAGAACCCGATCTTCAGGGGATCCAACCATTGGCCTATGAAGTTGAGCAGGAAAAGAAATCAAGTGGGCACAGACCTAGTCGTCACACAAAGAGACATAAAGACAGGAGAGGAGGTGGCAGGAATGATGCAATGGGATCTGCAACTAGAAATGATAGGTTCTTAGAGCCCCATGACTCAAATCTAAATTCACCAAGATCTGCAACTAGAAATGATAGGTTCTCGGAGCCCCGTGACTCAAATCTAAGTTCACCTAGATCTGCAACTAGAAATGATAGGTTCTCAGAGCCCCGTGACTCGAATCTAAGTTCATCAAGATCTGCAAATAGGTGGAGTAGGAAACCTGGTAGTTAACAGATGCTGTGTTATTAGGATCCAAGGTTCCTGTGGTTCACAGTTTTCTGATCGTAACAACCATGTGTGGTTGTGTTCAAGAAATCCTTTACATATCAAGAAGTTTGTTATGGAGGTATTTTCACTTTGTATTCTGGGGAAGCTTTGCGCAGCAGCTATTTTATTATCAGTGTATTCACAAGTCATTGCGGTGCTGCTGTGGTAACTTTGTTTCCTGAGCCTCTGGCGCTAGTGTATATTTGAGTGTACTTTCGAGTTAATAATGGTTGCAATTTGGCTAGAAGTTGTGATTCGTCTGTTTTTTAGTGCCATGCTAAAATGTGGCTGGGCTATATTAGGCATTTTGATATATTTTAAGCTTGATACTCTTTATACAGTACTGATGACTAAATAGAAAATATTCATTGTTGAGGTAATAATGGTTGCATTGTGAGGTCAGCATTCAGCATTGCTAGATTTGCTGGGTTGAGACTTGCAGCAGCTGGATCAAATTACTTCGAAATTGCTTGCTTATGAAAAGATTGGTTGAAGAGTGCTGTTAAATACATCACTGAGATACTTTCGTTTTTTGCTAGTCTTCTTCTTTACATGTGAATGAGAGGTTCTACATTTGTACTTATACAGTTTACTTTGGTGGATGTTCACCACATTAATTTCGATTGTTTTATGAAGGTTTTGGTATAATATGCTAATAATTTTTTTATCCATTAAGCAGGTTTACGTTTGTTTGTACTTTGTAGTATAGTTCGTTTGAGATGATGTGGAACTTCTAT
>Glyma14g12390.1 sequence type=CDS gene model=Glyma14g12390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACGACCAAGAACAACACCGACAACCTCAACCCAACAGCAACAACGGTTCCAACGCCGACCCTTTTCTCCTCAACTACAGCACCTCCGATCTCCGAACCGCTTCAGAGTTTCTCGCCACGTGGCTCCCTTTCCTCTCACGAGATCTCTGCACTCGATGCACCCTGTCCCTCTCCGATCGCATCCGCTCCATCGACCCAGGTGAAGCGCCTCAAAACGAAATCCCCAGTGACCAAAACGACGTCGACGTGGAGGATAACTGCGACAACTGCGACGCGCATTCTCTCGGGAGTTGGAAGGACGGGGCGGAGGTGAATAACTCCAATGTGGAGACTCCGAGCCAGAGGATTTCATGGGCCGACATGGCCCAAGAAGATGACGAGTTCGGCGACGAAGAAGACAGCAACAATGGCGGGAATTTTGCGGTGGGTGATTCGAATGCTTTCTCTCATGTGGCTAAGGTTGTGGCTGAGAAGCCTACTCTGCCGAGGGAGCAGAGGGAGTACATTAGGTTCATGAATGTGAGGCGAAAGAAGGACTTTATCTGCTTTGAGAGGGTTAACGGGAAGCTTGTGAACATTCTTGAAGGGCTTGAGCTGCACACTGGGATTTTCAGTGCTGCTGAGCAGAAGAGGATTGTTAATTATGTCGCCTCGTTGCAGGAAATGGGGAGAAAGGGGGAATTGAAAGAGCAAACGTTTTCAGCTCCCCAAAAGTGGATGAGGGGTAAGGGACGCCAAACCATCCAATTTGGGTGCTGTTACAATTATGCAGTGGATAGAGATGGTAACCCACCTGGTATTCTTGGGAATGGAATGGTTGATCCTATACCTGCTCTTTTCAAGGTCATTATTCGACGTCTTATCAAGTGGCATGTACTCCCTCCTACTTGTGTGCCAGATAGTTGCATTGTTAATATCTATGAAGAAGGGGACTGTATACCTCCACATATAGATAACCATGACTTTGTTCGACCATTTTGCACTGTATCATTTCTTAGTGAGTGCAATATAGTTTTTGGATCAAACTTAAAAATTGTAGGCCCTGGTGAATTTGATGGCTCAATTGCTATTCCGTTACCTATGGGATCTGTACTTGTCTTGAACGGAAATGGAGCTGATGTAGCTAAGCATTGCGTGCCTGCAGTTCCTACCAAAAGGATATCAATCACATTTAGAAGAATGGATGTGTCCAAGCGGCCTTTTGGGTATGTTCCAGAACCCGATCTTCAGGGGATCCAACCATTGGCCTATGAAGTTGAGCAGGAAAAGAAATCAAGTGGGCACAGACCTAGTCGTCACACAAAGAGACATAAAGACAGGAGAGGAGGTGGCAGGAATGATGCAATGGGATCTGCAACTAGAAATGATAGGTTCTTAGAGCCCCATGACTCAAATCTAAATTCACCAAGATCTGCAACTAGAAATGATAGGTTCTCGGAGCCCCGTGACTCAAATCTAAGTTCACCTAGATCTGCAACTAGAAATGATAGGTTCTCAGAGCCCCGTGACTCGAATCTAAGTTCATCAAGATCTGCAAATAGGTGGAGTAGGAAACCTGGTAGTTAA >Glyma14g12390.2 sequence type=CDS gene model=Glyma14g12390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACGACCAAGAACAACACCGACAACCTCAACCCAACAGCAACAACGGTTCCAACGCCGACCCTTTTCTCCTCAACTACAGCACCTCCGATCTCCGAACCGCTTCAGAGTTTCTCGCCACGTGGCTCCCTTTCCTCTCACGAGATCTCTGCACTCGATGCACCCTGTCCCTCTCCGATCGCATCCGCTCCATCGACCCAGGTGAAGCGCCTCAAAACGAAATCCCCAGTGACCAAAACGACGTCGACGTGGAGGATAACTGCGACAACTGCGACGCGCATTCTCTCGGGAGTTGGAAGGACGGGGCGGAGGTGAATAACTCCAATGTGGAGACTCCGAGCCAGAGGATTTCATGGGCCGACATGGCCCAAGAAGATGACGAGTTCGGCGACGAAGAAGACAGCAACAATGGCGGGAATTTTGCGGTGGGTGATTCGAATGCTTTCTCTCATGTGGCTAAGGTTGTGGCTGAGAAGCCTACTCTGCCGAGGGAGCAGAGGGAGTACATTAGGTTCATGAATGTGAGGCGAAAGAAGGACTTTATCTGCTTTGAGAGGGTTAACGGGAAGCTTGTGAACATTCTTGAAGGGCTTGAGCTGCACACTGGGATTTTCAGTGCTGCTGAGCAGAAGAGGATTGTTAATTATGTCGCCTCGTTGCAGGAAATGGGGAGAAAGGGGGAATTGAAAGAGCAAACGTTTTCAGCTCCCCAAAAGTGGATGAGGGGTAAGGGACGCCAAACCATCCAATTTGGGTGCTGTTACAATTATGCAGATAGAGATGGTAACCCACCTGGTATTCTTGGGAATGGAATGGTTGATCCTATACCTGCTCTTTTCAAGGTCATTATTCGACGTCTTATCAAGTGGCATGTACTCCCTCCTACTTGTGTGCCAGATAGTTGCATTGTTAATATCTATGAAGAAGGGGACTGTATACCTCCACATATAGATAACCATGACTTTGTTCGACCATTTTGCACTGTATCATTTCTTAGTGAGTGCAATATAGTTTTTGGATCAAACTTAAAAATTGTAGGCCCTGGTGAATTTGATGGCTCAATTGCTATTCCGTTACCTATGGGATCTGTACTTGTCTTGAACGGAAATGGAGCTGATGTAGCTAAGCATTGCGTGCCTGCAGTTCCTACCAAAAGGATATCAATCACATTTAGAAGAATGGATGTGTCCAAGCGGCCTTTTGGGTATGTTCCAGAACCCGATCTTCAGGGGATCCAACCATTGGCCTATGAAGTTGAGCAGGAAAAGAAATCAAGTGGGCACAGACCTAGTCGTCACACAAAGAGACATAAAGACAGGAGAGGAGGTGGCAGGAATGATGCAATGGGATCTGCAACTAGAAATGATAGGTTCTTAGAGCCCCATGACTCAAATCTAAATTCACCAAGATCTGCAACTAGAAATGATAGGTTCTCGGAGCCCCGTGACTCAAATCTAAGTTCACCTAGATCTGCAACTAGAAATGATAGGTTCTCAGAGCCCCGTGACTCGAATCTAAGTTCATCAAGATCTGCAAATAGGTGGAGTAGGAAACCTGGTAGTTAA
>Glyma14g12390.1 sequence type=predicted peptide gene model=Glyma14g12390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDDQEQHRQPQPNSNNGSNADPFLLNYSTSDLRTASEFLATWLPFLSRDLCTRCTLSLSDRIRSIDPGEAPQNEIPSDQNDVDVEDNCDNCDAHSLGSWKDGAEVNNSNVETPSQRISWADMAQEDDEFGDEEDSNNGGNFAVGDSNAFSHVAKVVAEKPTLPREQREYIRFMNVRRKKDFICFERVNGKLVNILEGLELHTGIFSAAEQKRIVNYVASLQEMGRKGELKEQTFSAPQKWMRGKGRQTIQFGCCYNYAVDRDGNPPGILGNGMVDPIPALFKVIIRRLIKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKIVGPGEFDGSIAIPLPMGSVLVLNGNGADVAKHCVPAVPTKRISITFRRMDVSKRPFGYVPEPDLQGIQPLAYEVEQEKKSSGHRPSRHTKRHKDRRGGGRNDAMGSATRNDRFLEPHDSNLNSPRSATRNDRFSEPRDSNLSSPRSATRNDRFSEPRDSNLSSSRSANRWSRKPGS* >Glyma14g12390.2 sequence type=predicted peptide gene model=Glyma14g12390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDDQEQHRQPQPNSNNGSNADPFLLNYSTSDLRTASEFLATWLPFLSRDLCTRCTLSLSDRIRSIDPGEAPQNEIPSDQNDVDVEDNCDNCDAHSLGSWKDGAEVNNSNVETPSQRISWADMAQEDDEFGDEEDSNNGGNFAVGDSNAFSHVAKVVAEKPTLPREQREYIRFMNVRRKKDFICFERVNGKLVNILEGLELHTGIFSAAEQKRIVNYVASLQEMGRKGELKEQTFSAPQKWMRGKGRQTIQFGCCYNYADRDGNPPGILGNGMVDPIPALFKVIIRRLIKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKIVGPGEFDGSIAIPLPMGSVLVLNGNGADVAKHCVPAVPTKRISITFRRMDVSKRPFGYVPEPDLQGIQPLAYEVEQEKKSSGHRPSRHTKRHKDRRGGGRNDAMGSATRNDRFLEPHDSNLNSPRSATRNDRFSEPRDSNLSSPRSATRNDRFSEPRDSNLSSSRSANRWSRKPGS*
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