Glyma14g12345 - SoyBase

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Report for Sequence Feature Glyma14g12345

Feature Type:	gene_model
Chromosome:	Gm14
Start:	11081319
stop:	11086520
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g12345

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G49880	AT	Annotation by Michelle Graham. TAIR10: mitotic checkpoint family protein \| chr5:20282305-20287775 FORWARD LENGTH=726	SoyBase	E_val: 4.00E-17	ISS
GO:0007093	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitotic cell cycle checkpoint	SoyBase	N/A	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005635	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nuclear envelope	SoyBase	N/A	ISS
PF05557	PFAM	Mitotic checkpoint protein	JGI		ISS
UniRef100_B9SPB2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Spindle assembly checkpoint component mad1, putative n=1 Tax=Ricinus communis RepID=B9SPB2_RICCO	SoyBase	E_val: 2.00E-19	ISS
UniRef100_UPI000233BB2F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233BB2F related cluster n=1 Tax=unknown RepID=UPI000233BB2F	SoyBase	E_val: 7.00E-104	ISS

Expression Patterns of Glyma14g12345

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g12345 not represented in the dataset	Glyma14g12345 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g12345 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g105500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g12345

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g12345

Limit To All Plant Sequences

>Glyma14g12345.1   sequence type=CDS   gene model=Glyma14g12345   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTGAACAAATGGAATGCAGAGCTAATAATGCTGAGAGAGAAGCAGAGCTGCTAAAAGAACAACTGAAACATCTTAAGGATCAACTTGATAAGTGTTTGCATCAGAAGATTGAAGTTGAAAAAAAGCTATCTACTTTAATGTTTCAAGAAGTTGCTTCTACAGAGAGTAATGTTTTAGTTAAGCATTTGCAACAGGAGCTTCGGAACTATAATATGGCCTGTGACACATTTCTGACAGGCCTTCCCATCACTATTGCAGATCTTGAACCCCATCAGATACATTCCTTCTATGAATCTCTGAGTAATTATTGTTCCTTTGAGGGTGTCCTATACTGTAAGCCTCATTTCCATCAACTGTTTAAGATGACCGGCAGCTGGGACAAAAGTTTTGAAGGTGTTCCAAGAAGTGTTAGAGTGGAAAGACCTGCTGATTAG

Predicted protein sequences of Glyma14g12345

Limit To All Plant Sequences

>Glyma14g12345.1   sequence type=predicted peptide   gene model=Glyma14g12345   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLEQMECRANNAEREAELLKEQLKHLKDQLDKCLHQKIEVEKKLSTLMFQEVASTESNVLVKHLQQELRNYNMACDTFLTGLPITIADLEPHQIHSFYESLSNYCSFEGVLYCKPHFHQLFKMTGSWDKSFEGVPRSVRVERPAD*

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