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Report for Sequence Feature Glyma14g12315

Feature Type:gene_model
Chromosome:Gm14
Start:11041288
stop:11042331
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G05710AT Annotation by Michelle Graham. TAIR10: aconitase 3 | chr2:2141591-2146350 FORWARD LENGTH=990 SoyBaseE_val: 2.00E-105ISS
GO:0000302GO-bp Annotation by Michelle Graham. GO Biological Process: response to reactive oxygen species SoyBaseN/AISS
GO:0000303GO-bp Annotation by Michelle Graham. GO Biological Process: response to superoxide SoyBaseN/AISS
GO:0006094GO-bp Annotation by Michelle Graham. GO Biological Process: gluconeogenesis SoyBaseN/AISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006101GO-bp Annotation by Michelle Graham. GO Biological Process: citrate metabolic process SoyBaseN/AISS
GO:0006102GO-bp Annotation by Michelle Graham. GO Biological Process: isocitrate metabolic process SoyBaseN/AISS
GO:0006486GO-bp Annotation by Michelle Graham. GO Biological Process: protein glycosylation SoyBaseN/AISS
GO:0006487GO-bp Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation SoyBaseN/AISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0006833GO-bp Annotation by Michelle Graham. GO Biological Process: water transport SoyBaseN/AISS
GO:0006972GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic response SoyBaseN/AISS
GO:0006979GO-bp Annotation by Michelle Graham. GO Biological Process: response to oxidative stress SoyBaseN/AISS
GO:0007030GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi organization SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0009266GO-bp Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009743GO-bp Annotation by Michelle Graham. GO Biological Process: response to carbohydrate stimulus SoyBaseN/AISS
GO:0009853GO-bp Annotation by Michelle Graham. GO Biological Process: photorespiration SoyBaseN/AISS
GO:0009873GO-bp Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway SoyBaseN/AISS
GO:0010039GO-bp Annotation by Michelle Graham. GO Biological Process: response to iron ion SoyBaseN/AISS
GO:0015979GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0051788GO-bp Annotation by Michelle Graham. GO Biological Process: response to misfolded protein SoyBaseN/AISS
GO:0055072GO-bp Annotation by Michelle Graham. GO Biological Process: iron ion homeostasis SoyBaseN/AISS
GO:0080129GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0003994GO-mf Annotation by Michelle Graham. GO Molecular Function: aconitate hydratase activity SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0051539GO-mf Annotation by Michelle Graham. GO Molecular Function: 4 iron, 4 sulfur cluster binding SoyBaseN/AISS
PTHR11670Panther ACONITASE JGI ISS
PTHR11670:SF1Panther 3-ISOPROPYLMALATE DEHYDRATASE SUBUNIT JGI ISS
PF00330PFAM Aconitase family (aconitate hydratase) JGI ISS
UniRef100_I1M443UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M443_SOYBN SoyBaseE_val: 8.00E-106ISS
UniRef100_P49608UniRef Annotation by Michelle Graham. Most informative UniRef hit: Aconitate hydratase, cytoplasmic n=1 Tax=Cucurbita maxima RepID=ACOC_CUCMA SoyBaseE_val: 9.00E-104ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g12315 not represented in the dataset

Glyma14g12315 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g105300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma14g12315.1   sequence type=CDS   gene model=Glyma14g12315   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGTGTTTTATCTTTAACCCGTTTTTTCTCCTCTCCTCTGGATTTTACTGGAATCCCTGCTGTTGTTGACCTGGCTTGCGTGCGTGATGCTAGGAATAAGCTTGGCAGTGATTCTAATAAGATTAATCCTCTGGTTCCTGTTGATCTTGTCATTAATCATTCAGTTCAAGTTGATGTAGCAAGGTCAGAGAATGTAAGAAACAATGAGAGATTTGCTTTTCTTAAATGGGGATCAAATGCTTTCCGTAATATGCTTGTTGTCCCTCCTGGATCTGGTATAGTACATCAGGTCAATCTTGAATATCTTGGACGCATTGTTTTCAATACTGAGGGCTTGTTGTATCCTGACAGTGTAGTTGGAACTGCTTCACATACAACAATGATAGATAGGCTTGGAGTTGCTGGATGGGGCTTTGGTGGTATTGAAGCAGAGGCAACAGTGCTTGGCAAGCCTATGAGCATGGTGTTATGTGTTGTTGGGTTCAAGTTATCTGGAAAACTGTGTAATGGTGTTACAACAACTGACTTGGTTCTAACTGTGACACAAATTCTTAGGAAACATGGTGTTGTAGGGAAATTTGTTGAATTTTATGGTAATTAA

>Glyma14g12315.1   sequence type=predicted peptide   gene model=Glyma14g12315   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRVLSLTRFFSSPLDFTGIPAVVDLACVRDARNKLGSDSNKINPLVPVDLVINHSVQVDVARSENVRNNERFAFLKWGSNAFRNMLVVPPGSGIVHQVNLEYLGRIVFNTEGLLYPDSVVGTASHTTMIDRLGVAGWGFGGIEAEATVLGKPMSMVLCVVGFKLSGKLCNGVTTTDLVLTVTQILRKHGVVGKFVEFYGN*







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