|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT2G05710 | AT | Annotation by Michelle Graham. TAIR10: aconitase 3 | chr2:2141591-2146350 FORWARD LENGTH=990 | SoyBase | E_val: 2.00E-105 | ISS |
GO:0000302 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to reactive oxygen species | SoyBase | N/A | ISS |
GO:0000303 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to superoxide | SoyBase | N/A | ISS |
GO:0006094 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gluconeogenesis | SoyBase | N/A | ISS |
GO:0006096 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycolysis | SoyBase | N/A | ISS |
GO:0006101 | GO-bp | Annotation by Michelle Graham. GO Biological Process: citrate metabolic process | SoyBase | N/A | ISS |
GO:0006102 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isocitrate metabolic process | SoyBase | N/A | ISS |
GO:0006486 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein glycosylation | SoyBase | N/A | ISS |
GO:0006487 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation | SoyBase | N/A | ISS |
GO:0006511 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
GO:0006833 | GO-bp | Annotation by Michelle Graham. GO Biological Process: water transport | SoyBase | N/A | ISS |
GO:0006972 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hyperosmotic response | SoyBase | N/A | ISS |
GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
GO:0007030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi organization | SoyBase | N/A | ISS |
GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
GO:0009266 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus | SoyBase | N/A | ISS |
GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
GO:0009733 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus | SoyBase | N/A | ISS |
GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
GO:0009743 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to carbohydrate stimulus | SoyBase | N/A | ISS |
GO:0009853 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photorespiration | SoyBase | N/A | ISS |
GO:0009873 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway | SoyBase | N/A | ISS |
GO:0010039 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to iron ion | SoyBase | N/A | ISS |
GO:0015979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthesis | SoyBase | N/A | ISS |
GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
GO:0051788 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to misfolded protein | SoyBase | N/A | ISS |
GO:0055072 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron ion homeostasis | SoyBase | N/A | ISS |
GO:0080129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly | SoyBase | N/A | ISS |
GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
GO:0003994 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aconitate hydratase activity | SoyBase | N/A | ISS |
GO:0005507 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: copper ion binding | SoyBase | N/A | ISS |
GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
GO:0051539 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 4 iron, 4 sulfur cluster binding | SoyBase | N/A | ISS |
PTHR11670 | Panther | ACONITASE | JGI | ISS | |
PTHR11670:SF1 | Panther | 3-ISOPROPYLMALATE DEHYDRATASE SUBUNIT | JGI | ISS | |
PF00330 | PFAM | Aconitase family (aconitate hydratase) | JGI | ISS | |
UniRef100_I1M443 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M443_SOYBN | SoyBase | E_val: 8.00E-106 | ISS |
UniRef100_P49608 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Aconitate hydratase, cytoplasmic n=1 Tax=Cucurbita maxima RepID=ACOC_CUCMA | SoyBase | E_val: 9.00E-104 | ISS |
Glyma14g12315 not represented in the dataset |
Glyma14g12315 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.14g105300 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g12315.1 sequence type=CDS gene model=Glyma14g12315 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGTGTTTTATCTTTAACCCGTTTTTTCTCCTCTCCTCTGGATTTTACTGGAATCCCTGCTGTTGTTGACCTGGCTTGCGTGCGTGATGCTAGGAATAAGCTTGGCAGTGATTCTAATAAGATTAATCCTCTGGTTCCTGTTGATCTTGTCATTAATCATTCAGTTCAAGTTGATGTAGCAAGGTCAGAGAATGTAAGAAACAATGAGAGATTTGCTTTTCTTAAATGGGGATCAAATGCTTTCCGTAATATGCTTGTTGTCCCTCCTGGATCTGGTATAGTACATCAGGTCAATCTTGAATATCTTGGACGCATTGTTTTCAATACTGAGGGCTTGTTGTATCCTGACAGTGTAGTTGGAACTGCTTCACATACAACAATGATAGATAGGCTTGGAGTTGCTGGATGGGGCTTTGGTGGTATTGAAGCAGAGGCAACAGTGCTTGGCAAGCCTATGAGCATGGTGTTATGTGTTGTTGGGTTCAAGTTATCTGGAAAACTGTGTAATGGTGTTACAACAACTGACTTGGTTCTAACTGTGACACAAATTCTTAGGAAACATGGTGTTGTAGGGAAATTTGTTGAATTTTATGGTAATTAA
>Glyma14g12315.1 sequence type=predicted peptide gene model=Glyma14g12315 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRVLSLTRFFSSPLDFTGIPAVVDLACVRDARNKLGSDSNKINPLVPVDLVINHSVQVDVARSENVRNNERFAFLKWGSNAFRNMLVVPPGSGIVHQVNLEYLGRIVFNTEGLLYPDSVVGTASHTTMIDRLGVAGWGFGGIEAEATVLGKPMSMVLCVVGFKLSGKLCNGVTTTDLVLTVTQILRKHGVVGKFVEFYGN*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||