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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma14g12290

Feature Type:gene_model
Chromosome:Gm14
Start:11002611
stop:11004055
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g12290
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G15130AT Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 72 | chr5:4904426-4906879 FORWARD LENGTH=548 SoyBaseE_val: 2.00E-38ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
PF03106PFAM WRKY DNA -binding domain JGI ISS
UniRef100_B9S2A5UniRef Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor, putative n=1 Tax=Ricinus communis RepID=B9S2A5_RICCO SoyBaseE_val: 9.00E-50ISS
UniRef100_UPI000233B9DEUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B9DE related cluster n=1 Tax=unknown RepID=UPI000233B9DE SoyBaseE_val: 1.00E-99ISS

Expression Patterns of Glyma14g12290
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g12290 not represented in the dataset
Glyma14g12290 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g12290 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma14g12290
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g12290
>Glyma14g12290.2   sequence type=CDS   gene model=Glyma14g12290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCAGAAAATATGGTGGGTGCCATTGCAGAAAATATGGGCAGAAAATGGGCAAAGGAAATCCATGCCCCCGAGCTTACTATCGATGCACTGCTTCTCCATCTTGTCCAGTAAGAAAACATGTGCAAAGATGTGCTGAAGACATGTCCATATTGATTACCACCTATGAAGGAACTCACAATCACCCTGTTCCTATGTCAGCCACTGCAATGGCCTGCAAAACTTCTGCTACAGCTTCCATGCTCCAATCTCCCTCATTGAGTTCACAACATGGATTAGTTGATTCAGCTATATCCTCCATCATCAACTCTAGTGCTCGTTATTACAACCCTAATAATGCTCTAAACTTCTCTACACACCAAGTTTCAAGACCGCAACAATTCTACTTCCCCAACTCATCCATTTCAACCTTGAATTCTCACCCCACAATCACTTTAGACCTTACAACACCTCCAACTTCTTCCTCAAACTCAAGCTTCACTTGCATGCCAAAATACTCATCAACAAACCTTAACTTTTCCTCAGGTTTCTCTCCTCTACATTCTCAGCATTCTTTCCCTAATCCCATT
Predicted protein sequences of Glyma14g12290
>Glyma14g12290.2   sequence type=predicted peptide   gene model=Glyma14g12290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRKYGGCHCRKYGQKMGKGNPCPRAYYRCTASPSCPVRKHVQRCAEDMSILITTYEGTHNHPVPMSATAMACKTSATASMLQSPSLSSQHGLVDSAISSIINSSARYYNPNNALNFSTHQVSRPQQFYFPNSSISTLNSHPTITLDLTTPPTSSSNSSFTCMPKYSSTNLNFSSGFSPLHSQHSFPNPI






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