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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma14g12266

Feature Type:gene_model
Chromosome:Gm14
Start:10997418
stop:10999516
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g12266
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G17660AT Annotation by Michelle Graham. TAIR10: ARF-GAP domain 15 | chr3:6037717-6039092 FORWARD LENGTH=232 SoyBaseE_val: 4.00E-78ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR23180Panther CENTAURIN/ARF JGI ISS
PTHR23180:SF31Panther ARF-LIKE JGI ISS
PF01412PFAM Putative GTPase activating protein for Arf JGI ISS
UniRef100_G7KLP2UniRef Annotation by Michelle Graham. Most informative UniRef hit: ADP-ribosylation factor GTPase-activating protein AGD4 n=1 Tax=Medicago truncatula RepID=G7KLP2_MEDTR SoyBaseE_val: 1.00E-113ISS
UniRef100_UPI000233B9DEUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B9DE related cluster n=1 Tax=unknown RepID=UPI000233B9DE SoyBaseE_val: 3.00E-132ISS

Expression Patterns of Glyma14g12266
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g12266 not represented in the dataset
Glyma14g12266 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g12266 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g105100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g12266
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g12266
>Glyma14g12266.1   sequence type=CDS   gene model=Glyma14g12266   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCGGAAAAGCCTCCGTCTCCAAGGAGCTCCATGCCAAGCACACCAAGATATTAGAGGGACTTGTTAAGCTACCTGACAACAGGGAATGTGCAGACTGCAGGACCAAGGCACCACGATGGGCAAGTGTGAACTTAGGGATATTCATTTGCATGCAATGTTCAGGAATTCACCGTAGTCTTGGAGTGCATATATCAAAGGTGCGGTCCACAACTTTGGATACATGGTTGCCAGATCAAGTTTCTTTTATGCAATTAATTGGTAATGCAAAGTCAAATAAGCACTGGGAGGCAGAATTACCGCCAAATTTTGACAGAAATGGATATGGAGTTGAGAAATTTATTCGTTCCAAGTATGTGGAGAAAAGATGGGCTTCAAAAGGTGGACTACAGCCAGCTTCAAAGTCAGCTGAAATAATCTTTAACTCGAATGAATCACCAGCTGCTGGGGCCAAGAGTGCCACTCAGAGGAATAGGAGATTGTCTCTTGAGGAAAGCATTCTTGTGAAACATGTGGCACAAATTCGGCCTCCAGTCACGAGATATCATGAGGTATTCATGTTTAATGTCAAGTTCAATCCGTGA
Predicted protein sequences of Glyma14g12266
>Glyma14g12266.1   sequence type=predicted peptide   gene model=Glyma14g12266   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGKASVSKELHAKHTKILEGLVKLPDNRECADCRTKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQVSFMQLIGNAKSNKHWEAELPPNFDRNGYGVEKFIRSKYVEKRWASKGGLQPASKSAEIIFNSNESPAAGAKSATQRNRRLSLEESILVKHVAQIRPPVTRYHEVFMFNVKFNP*






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