Glyma14g12202 - SoyBase

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Report for Sequence Feature Glyma14g12202

Feature Type:	gene_model
Chromosome:	Gm14
Start:	10920492
stop:	10920975
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g12202

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
ATCG00540	AT	Annotation by Michelle Graham. TAIR10: photosynthetic electron transfer A \| chrC:61657-62619 FORWARD LENGTH=320	SoyBase	E_val: 3.00E-57	ISS
GO:0006091	GO-bp	Annotation by Michelle Graham. GO Biological Process: generation of precursor metabolites and energy	SoyBase	N/A	ISS
GO:0006354	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation	SoyBase	N/A	ISS
GO:0009767	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport chain	SoyBase	N/A	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0019684	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009512	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytochrome b6f complex	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0031361	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to thylakoid membrane	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
GO:0045158	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	SoyBase	N/A	ISS
UniRef100_I2E2Q5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Cytochrome f n=1 Tax=Vigna unguiculata RepID=I2E2Q5_VIGUN	SoyBase	E_val: 4.00E-63	ISS
UniRef100_I2E2Q5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome f n=1 Tax=Vigna unguiculata RepID=I2E2Q5_VIGUN	SoyBase	E_val: 4.00E-63	ISS

Expression Patterns of Glyma14g12202

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g12202 not represented in the dataset	Glyma14g12202 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g12202 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma14g12202

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g12202

Limit To All Plant Sequences

>Glyma14g12202.1   sequence type=CDS   gene model=Glyma14g12202   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAACTAGAAATGCTTTTTCTTGTATAAAGGAAGGGATTAGTGGATCCATTTCCATATCGATCATGATATATATAATAATTCAAGCACCCATTTCAAACGCATATCCAAATTTTGCACATAAGGGTTATGAAAATCTCCAAGATGCAACTGGTCGTATTGTCTGTGCCAATTGCCATTTAGCTAATAAGCCAATGGATATTGAGGTTCCACAAGCGGTACTTCTTGATACTGTATTTGAAGCAGTTGTTCGAATTCCTTATGATATGCAAGTGAAACAAGTTCTTGCTAATGGTAAAAAAGGAGCTTTGAATGTGGGGGTTGTTCTTATTTTACCGAAATTGGCACCACCGATCGTATTTCGCCTGAGATTAAAAAGAAGATAG

Predicted protein sequences of Glyma14g12202

Limit To All Plant Sequences

>Glyma14g12202.1   sequence type=predicted peptide   gene model=Glyma14g12202   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQTRNAFSCIKEGISGSISISIMIYIIIQAPISNAYPNFAHKGYENLQDATGRIVCANCHLANKPMDIEVPQAVLLDTVFEAVVRIPYDMQVKQVLANGKKGALNVGVVLILPKLAPPIVFRLRLKRR*

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