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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G10780 | AT | Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP017207, transmembrane protein 85 (InterPro:IPR016687), Protein of unknown function DUF1077 (InterPro:IPR009445); Has 395 Blast hits to 395 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 122; Plants - 51; Viruses - | SoyBase | E_val: 2.00E-75 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG3318 | KOG | Predicted membrane protein | JGI | ISS | |
| PTHR19315 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR19315:SF4 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF06417 | PFAM | Protein of unknown function (DUF1077) | JGI | ISS | |
| UniRef100_G7I7L8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane protein n=1 Tax=Medicago truncatula RepID=G7I7L8_MEDTR | SoyBase | E_val: 3.00E-105 | ISS |
| UniRef100_I1M998 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M998_SOYBN | SoyBase | E_val: 7.00E-159 | ISS |
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Glyma14g12050 not represented in the dataset |
Glyma14g12050 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g33800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g103800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g12050.3 sequence type=transcript gene model=Glyma14g12050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGTCGTTTTGCAAAAAAAAAAAAATCAAAAGGAGAAAAAACCAAACTTTTGAAACCTCATATCATATCATCGTTAGCGTTACCCTCGGAACTGAACTGAACTGAACTGAACCGGATCCAGAGAGTGCTCCTAAACGACGCCGTTTCGCAAGCATCAGTAGTGTAGTCGCAGAGAATCAAATCAATGGAGAAGGGAAAGGGAGTGATGGGATCGGGAGGACGAAGATGGGGCGTTGACTTCTCCGACAATTCCACTTCTCGCGATATTCCCGATCCTCCCGGTTTCTGTCGCACTTCTCTCGATCAGGACGATTCAACGCTCAGTCGCCAGAAGAAGGACGCTGAATCCAACTGGAAAGCCCAGAAAGCTTGGGAGGTAGCACAAGCCCCTATGAAGAATTTGCTAATGATGGGGTTCATGATGTGGATGGCTGGTAGCACAGTCCACTTGTTCAGCATTGGGATCACTTTCTCAGCCCTTTGGCAACCCATCAGTGCCCTACAGAGTGTCGGAAAGATGTTTGAGGGCATGGAAGGAGTATTTTGTAGCATCTTCTGCAATTCATTCTCTTCTGGAATGGTGTTTGAGCCCTACAAAGACAATAAGGTGGAGCTTCTTGGACCTAAGTTGTTATTCATAGCCCTTAATTTGGGCGGCCTGGCACTAGGTGTTTGGAAGCTCAATGCATTGGGGCTTCTTCCTACACACACATCAGACTGGGTCTCATCCTTGGCACCTGCTCAGGAGGTGGAGTTTTCAGGTGGGGGTGTTAATTTGGGGTGATTTGCGAGTTTTTTCATTCCCAGCTTGTCTTGGAGGGAATTTAAGTAAACAAGGACAAGGATTCAAGGTTGGTGGTCAACATTATATTCTAATGGTTATGATGGCCCACGTGAAGCATGACTGATTTCCGATTTCAAAAAATGTTGTAGTCATTAAAATTGGACTGGGTTTGTAGTATTAGTTTGAAGATGCTCCGAATAATTAAGATTTTTCTATTTATATTTTGGATTCTAATATTTGCACGTTATAATTTCCTATATCTCTTTTATCAGGTTTGATATAAAGAAAAATGATGTACAAGAATTTCTTGTATATTTATGAAGCATTAGCTAATGATTTCTTTTATATGCTTAAGTTGATTCACCTTTCACCACTTGCATGTATAGGTGGTATATCTATCTGTGATTCTGTGCCCTTGTAACTAATTAACTTACTTGAAAATTTTAATCATAATGTACCATGATGAAAGTATTCTTC >Glyma14g12050.4 sequence type=transcript gene model=Glyma14g12050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGTCGTTTTGCAAAAAAAAAAAAATCAAAAGGAGAAAAAACCAAACTTTTGAAACCTCATATCATATCATCGTTAGCGTTACCCTCGGAACTGAACTGAACTGAACTGAACCGGATCCAGAGAGTGCTCCTAAACGACGCCGTTTCGCAAGCATCAGTAGTGTAGTCGCAGAGAATCAAATCAATGGAGAAGGGAAAGGGAGTGATGGGATCGGGAGGACGAAGATGGGGCGTTGACTTCTCCGACAATTCCACTTCTCGCGATATTCCCGATCCTCCCGGTTTCTGTCGCACTTCTCTCGATCAGGACGATTCAACGCTCAGTCGCCAGAAGAAGGACGCTGAATCCAACTGGAAAGCCCAGAAAGCTTGGGAGGTAGCACAAGCCCCTATGAAGAATTTGCTAATGATGGGGTTCATGATGTGGATGGCTGGTAGCACAGTCCACTTGTTCAGCATTGGGATCACTTTCTCAGCCCTTTGGCAACCCATCAGTGCCCTACAGAGTGTCGGAAAGATGTTTGAGCCCTACAAAGACAATAAGGTGGAGCTTCTTGGACCTAAGTTGTTATTCATAGCCCTTAATTTGGGCGGCCTGGCACTAGGTGTTTGGAAGCTCAATGCATTGGGGCTTCTTCCTACACACACATCAGACTGGGTCTCATCCTTGGCACCTGCTCAGGAGGTGGAGTTTTCAGGTGGGGGTGTTAATTTGGGGTGATTTGCGAGTTTTTTCATTCCCAGCTTGTCTTGGAGGGAATTTAAGTAAACAAGGACAAGGATTCAAGGTTGGTGGTCAACATTATATTCTAATGGTTATGATGGCCCACGTGAAGCATGACTGATTTCCGATTTCAAAAAATGTTGTAGTCATTAAAATTGGACTGGGTTTGTAGTATTAGTTTGAAGATGCTCCGAATAATTAAGATTTTTCTATTTATATTTTGGATTCTAATATTTGCACGTTATAATTTCCTATATCTCTTTTATCAGGTTTGATATAAAGAAAAATGATGTACAAGAATTTCTTGTATATTTATGAAGCATTAGCTAATGATTTCTTTTATATGCTTAAGTTGATTCACCTTTCACCACTTGCATGTATAGGTGGTATATCTATCTGTGATTCTGTGCCCTTGTAACTAATTAACTTACTTGAAAATTTTAATCATAATGTACCATGATGAAAGTATTCTTC
>Glyma14g12050.1 sequence type=CDS gene model=Glyma14g12050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAAGGGAAAGGGAGTGATGGGATCGGGAGGACGAAGATGGGGCGTTGACTTCTCCGACAATTCCACTTCTCGCGATATTCCCGATCCTCCCGGTTTCTGTCGCACTTCTCTCGATCAGGACGATTCAACGCTCAGTCGCCAGAAGAAGGACGCTGAATCCAACTGGAAAGCCCAGAAAGCTTGGGAGGTAGCACAAGCCCCTATGAAGAATTTGCTAATGATGGGGTTCATGATGTGGATGGCTGGTAGCACAGTCCACTTGTTCAGCATTGGGATCACTTTCTCAGCCCTTTGGCAACCCATCAGTGCCCTACAGAGTGTCGGAAAGATGTTTGAGCCCTACAAAGACAATAAGGTGGAGCTTCTTGGACCTAAGTTGTTATTCATAGCCCTTAATTTGGGCGGCCTGGCACTAGGTGTTTGGAAGCTCAATGCATTGGGGCTTCTTCCTACACACACATCAGACTGGGTCTCATCCTTGGCACCTGCTCAGGTGAGGTGGAGTTTTCAGGTGGGGGTGTTAATTTGGGGTGATTTGCGAGTTTTTTCATTCCCAGCTTGTCTTGGAGGGAATTTAAGTAAACAAGGACAAGGATTCAAGGTTGGTGGTCAACATTATATTCTAATGGTTATGATGGCCCACGTGAAGCATGACTGA >Glyma14g12050.3 sequence type=CDS gene model=Glyma14g12050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAAGGGAAAGGGAGTGATGGGATCGGGAGGACGAAGATGGGGCGTTGACTTCTCCGACAATTCCACTTCTCGCGATATTCCCGATCCTCCCGGTTTCTGTCGCACTTCTCTCGATCAGGACGATTCAACGCTCAGTCGCCAGAAGAAGGACGCTGAATCCAACTGGAAAGCCCAGAAAGCTTGGGAGGTAGCACAAGCCCCTATGAAGAATTTGCTAATGATGGGGTTCATGATGTGGATGGCTGGTAGCACAGTCCACTTGTTCAGCATTGGGATCACTTTCTCAGCCCTTTGGCAACCCATCAGTGCCCTACAGAGTGTCGGAAAGATGTTTGAGGGCATGGAAGGAGTATTTTGTAGCATCTTCTGCAATTCATTCTCTTCTGGAATGGTGTTTGAGCCCTACAAAGACAATAAGGTGGAGCTTCTTGGACCTAAGTTGTTATTCATAGCCCTTAATTTGGGCGGCCTGGCACTAGGTGTTTGGAAGCTCAATGCATTGGGGCTTCTTCCTACACACACATCAGACTGGGTCTCATCCTTGGCACCTGCTCAGGAGGTGGAGTTTTCAGGTGGGGGTGTTAATTTGGGGTGA >Glyma14g12050.4 sequence type=CDS gene model=Glyma14g12050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAAGGGAAAGGGAGTGATGGGATCGGGAGGACGAAGATGGGGCGTTGACTTCTCCGACAATTCCACTTCTCGCGATATTCCCGATCCTCCCGGTTTCTGTCGCACTTCTCTCGATCAGGACGATTCAACGCTCAGTCGCCAGAAGAAGGACGCTGAATCCAACTGGAAAGCCCAGAAAGCTTGGGAGGTAGCACAAGCCCCTATGAAGAATTTGCTAATGATGGGGTTCATGATGTGGATGGCTGGTAGCACAGTCCACTTGTTCAGCATTGGGATCACTTTCTCAGCCCTTTGGCAACCCATCAGTGCCCTACAGAGTGTCGGAAAGATGTTTGAGCCCTACAAAGACAATAAGGTGGAGCTTCTTGGACCTAAGTTGTTATTCATAGCCCTTAATTTGGGCGGCCTGGCACTAGGTGTTTGGAAGCTCAATGCATTGGGGCTTCTTCCTACACACACATCAGACTGGGTCTCATCCTTGGCACCTGCTCAGGAGGTGGAGTTTTCAGGTGGGGGTGTTAATTTGGGGTGA
>Glyma14g12050.1 sequence type=predicted peptide gene model=Glyma14g12050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEKGKGVMGSGGRRWGVDFSDNSTSRDIPDPPGFCRTSLDQDDSTLSRQKKDAESNWKAQKAWEVAQAPMKNLLMMGFMMWMAGSTVHLFSIGITFSALWQPISALQSVGKMFEPYKDNKVELLGPKLLFIALNLGGLALGVWKLNALGLLPTHTSDWVSSLAPAQVRWSFQVGVLIWGDLRVFSFPACLGGNLSKQGQGFKVGGQHYILMVMMAHVKHD* >Glyma14g12050.3 sequence type=predicted peptide gene model=Glyma14g12050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEKGKGVMGSGGRRWGVDFSDNSTSRDIPDPPGFCRTSLDQDDSTLSRQKKDAESNWKAQKAWEVAQAPMKNLLMMGFMMWMAGSTVHLFSIGITFSALWQPISALQSVGKMFEGMEGVFCSIFCNSFSSGMVFEPYKDNKVELLGPKLLFIALNLGGLALGVWKLNALGLLPTHTSDWVSSLAPAQEVEFSGGGVNLG* >Glyma14g12050.4 sequence type=predicted peptide gene model=Glyma14g12050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEKGKGVMGSGGRRWGVDFSDNSTSRDIPDPPGFCRTSLDQDDSTLSRQKKDAESNWKAQKAWEVAQAPMKNLLMMGFMMWMAGSTVHLFSIGITFSALWQPISALQSVGKMFEPYKDNKVELLGPKLLFIALNLGGLALGVWKLNALGLLPTHTSDWVSSLAPAQEVEFSGGGVNLG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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