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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G31810 | AT | Annotation by Michelle Graham. TAIR10: ATP-dependent caseinolytic (Clp) protease/crotonase family protein | chr4:15387365-15390290 REVERSE LENGTH=409 | SoyBase | E_val: 0 | ISS |
| GO:0000085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009220 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0034968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone lysine methylation | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0003860 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 3-hydroxyisobutyryl-CoA hydrolase activity | SoyBase | N/A | ISS |
| KOG1684 | KOG | Enoyl-CoA hydratase | JGI | ISS | |
| PTHR11941 | Panther | ENOYL-COA HYDRATASE-RELATED | JGI | ISS | |
| PTHR11941:SF19 | Panther | 3-HYDROXYACYL-COA DEHYDROGENASE | JGI | ISS | |
| PF00378 | PFAM | Enoyl-CoA hydratase/isomerase family | JGI | ISS | |
| UniRef100_G7I876 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 3-hydroxyisobutyryl-CoA hydrolase-like protein n=1 Tax=Medicago truncatula RepID=G7I876_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M992 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M992_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma14g11860 not represented in the dataset |
Glyma14g11860 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g33950 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g102600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g11860.2 sequence type=transcript gene model=Glyma14g11860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGTTACCGAGGGAAAGCGTTCTTCAATTTCAGAGTTCGGGCTTCATTTCAGACTCAGAGTAACACTACAGTACAGAGTACAAACATCAAACACCTTCTCTGCACGCAAAAACCAGAATCGAAGATGCAGAGATTTAAAGCTCTGCTACCTCAACAAACTAGGTCCTCACTTCGCACTTTCTGTTCTCACCGTCGAGCTTTCTCCGCTCAACCAAATTACTCAGAGCACCACGACGACGATTCTCAGGAACAGATTTTGGTCGAAGGAAGAGCGAAATCGCGAGCAGCCATTCTCAACAGGCCGTCTTCGCTGAACTCGCTCAATGCTTCAATGGTTGCTCGGTTGAAGAGGCTGTATGATTCCTGGGAAGAGAACTCTGATATTGGCTTTGTTCTGATGAAGGGTAGTGGCAGAGCTTTCTGTTCTGGTGCAGATGTTGTTAGGTTGTATCAATCACTCAATGAAGGAAATACTGACGAAGCTGAACAGTTTTTTAAAACATTATATTCATTTGTATATCTTCAAGGGACATATCTTAAACCCCATGTTGCCATTTTGGATGGCATAACAATGGGATGTGGATCTGGAATTTCTCTGCCAGGGATGTTTCGTGTGGTAACTGATAAAACTATTTTTTCTCACCCAGAAACTCAAATAGGTTTCCACCCAGATGCAGGAGCTTCTTATATTTTGTCTCGTCTACCTGGCTACTTAGGGGAATACTTGGCCCTCACAGGAGATAAGCTTAATGGTGTTGAAATGATTGCCTGCCGCCTTGCTACTCATTATTCACTAAATGCAAGGCTTGCTTTGCTTGAAGAACGTCTTGGTAAACTAATCACAGATGAACCTTCTGTTGTGGAGGCATCCCTTGCACAGTATGGTGATCTTGTTTATCCAGATAGGAGCAGTGTCCTTCACAGGATTGATACAATTGATAGATGTTTCAGTCAAGAAACTGTGGAGGAAATTATTGAAGCTTTGGGGAAAGAAGCTACTGAATCTTGTGACGAATGGTGTTTGAATACTCTAAGGAGAATAAGAGAAGCCTCCCCTTTGAGTTTGAAAGTTACTTTACAATCTATACGTGAAGGTAGATTTGAAACTCTCGATAAATGTCTTATACGTGAGTACCGCATGTCCCTACGTGGAATTTCTAAGCTTGTCTCCTCTGATTTCTTCGAGGGTGTTCGAGCACGAATGGTTGATAAAGATTTTGCACCAAAGTGGGACCCACCTAGTTTAAAAGATATATCAGAGGACATGATTGAATACTATTTCTCTCCTTTAAGTGAAGTTCAATCTGAACTAGTGCTGCCAACGGCTTTGCGAGAACCTTACATGTGAAACTAGCATACCTCTAAGCAATGCTCTTAGCAAGGGTAAGACAAATAAGTTCTAATTTTGTTCTCAAACTTCATTAGAAGTTTTTAAAATATGTTTGTTGTATTGGCATAAAAATGTAGAAGTCACACTTGTATTTTTGGTGGGGAGAGGTGGTTGAATTATTCGCAGTCTTTCATGAAAATGTAGATCATCTAATTTTCTCACTCATCACAATGTCAATTCGTTGGCCATCCCTAGAGTCACCAAGAGGAAGAATTATTAAATACTAGTAGGTGGTGTGTAAACT
>Glyma14g11860.1 sequence type=CDS gene model=Glyma14g11860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGAGATTTAAAGCTCTGCTACCTCAACAAACTAGGTCCTCACTTCGCACTTTCTGTTCTCACCGTCGAGCTTTCTCCGCTCAACCAAATTACTCAGAGCACCACGACGACGATTCTCAGGAACAGATTTTGGTCGAAGGAAGAGCGAAATCGCGAGCAGCCATTCTCAACAGGCCGTCTTCGCTGAACTCGCTCAATGCTTCAATGGTTGCTCGGTTGAAGAGGCTGTATGATTCCTGGGAAGAGAACTCTGATATTGGCTTTGTTCTGATGAAGGGTAGTGGCAGAGCTTTCTGTTCTGGTGCAGATGTTGTTAGGTTGTATCAATCACTCAATGAAGGAAATACTGACGAAGCTGAACAGTTTTTTAAAACATTATATTCATTTGTATATCTTCAAGGGACATATCTTAAACCCCATGTTGCCATTTTGGATGGCATAACAATGGGATGTGGATCTGGAATTTCTCTGCCAGGGATGTTTCGTGTGGTAACTGATAAAACTATTTTTTCTCACCCAGAAACTCAAATAGGTTTCCACCCAGATGCAGGAGCTTCTTATATTTTGTCTCGTCTACCTGGCTACTTAGGGGAATACTTGGCCCTCACAGGAGATAAGCTTAATGGTGTTGAAATGATTGCCTGCCGCCTTGCTACTCATTATTCACTAAATGCAAGGCTTGCTTTGCTTGAAGAACGTCTTGGTAAACTAATCACAGATGAACCTTCTGTTGTGGAGGCATCCCTTGCACAGTATGGTGATCTTGTTTATCCAGATAGGAGCAGTGTCCTTCACAGGATTGATACAATTGATAGATGTTTCAGTCAAGAAACTGTGGAGGAAATTATTGAAGCTTTGGGGAAAGAAGCTACTGAATCTTGTGACGAATGGTGTTTGAATACTCTAAGGAGAATAAGAGAAGCCTCCCCTTTGAGTTTGAAAGTTACTTTACAATCTATACGTGAAGGTAGATTTGAAACTCTCGATAAATGTCTTATACGTGAGTACCGCATGTCCCTACGTGGAATTTCTAAGCTTGTCTCCTCTGATTTCTTCGAGGGTGTTCGAGCACGAATGGTTGATAAAGATTTTGCACCAAAGTGGGACCCACCTAGTTTAAAAGATATATCAGAGGACATGATTGAATACTATTTCTCTCCTTTAAGTGAAGTTCAATCTGAACTAGTGCTGCCAACGGCTTTGCGAGAACCTTACATGTGA >Glyma14g11860.2 sequence type=CDS gene model=Glyma14g11860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGAGATTTAAAGCTCTGCTACCTCAACAAACTAGGTCCTCACTTCGCACTTTCTGTTCTCACCGTCGAGCTTTCTCCGCTCAACCAAATTACTCAGAGCACCACGACGACGATTCTCAGGAACAGATTTTGGTCGAAGGAAGAGCGAAATCGCGAGCAGCCATTCTCAACAGGCCGTCTTCGCTGAACTCGCTCAATGCTTCAATGGTTGCTCGGTTGAAGAGGCTGTATGATTCCTGGGAAGAGAACTCTGATATTGGCTTTGTTCTGATGAAGGGTAGTGGCAGAGCTTTCTGTTCTGGTGCAGATGTTGTTAGGTTGTATCAATCACTCAATGAAGGAAATACTGACGAAGCTGAACAGTTTTTTAAAACATTATATTCATTTGTATATCTTCAAGGGACATATCTTAAACCCCATGTTGCCATTTTGGATGGCATAACAATGGGATGTGGATCTGGAATTTCTCTGCCAGGGATGTTTCGTGTGGTAACTGATAAAACTATTTTTTCTCACCCAGAAACTCAAATAGGTTTCCACCCAGATGCAGGAGCTTCTTATATTTTGTCTCGTCTACCTGGCTACTTAGGGGAATACTTGGCCCTCACAGGAGATAAGCTTAATGGTGTTGAAATGATTGCCTGCCGCCTTGCTACTCATTATTCACTAAATGCAAGGCTTGCTTTGCTTGAAGAACGTCTTGGTAAACTAATCACAGATGAACCTTCTGTTGTGGAGGCATCCCTTGCACAGTATGGTGATCTTGTTTATCCAGATAGGAGCAGTGTCCTTCACAGGATTGATACAATTGATAGATGTTTCAGTCAAGAAACTGTGGAGGAAATTATTGAAGCTTTGGGGAAAGAAGCTACTGAATCTTGTGACGAATGGTGTTTGAATACTCTAAGGAGAATAAGAGAAGCCTCCCCTTTGAGTTTGAAAGTTACTTTACAATCTATACGTGAAGGTAGATTTGAAACTCTCGATAAATGTCTTATACGTGAGTACCGCATGTCCCTACGTGGAATTTCTAAGCTTGTCTCCTCTGATTTCTTCGAGGGTGTTCGAGCACGAATGGTTGATAAAGATTTTGCACCAAAGTGGGACCCACCTAGTTTAAAAGATATATCAGAGGACATGATTGAATACTATTTCTCTCCTTTAAGTGAAGTTCAATCTGAACTAGTGCTGCCAACGGCTTTGCGAGAACCTTACATGTGA
>Glyma14g11860.1 sequence type=predicted peptide gene model=Glyma14g11860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQRFKALLPQQTRSSLRTFCSHRRAFSAQPNYSEHHDDDSQEQILVEGRAKSRAAILNRPSSLNSLNASMVARLKRLYDSWEENSDIGFVLMKGSGRAFCSGADVVRLYQSLNEGNTDEAEQFFKTLYSFVYLQGTYLKPHVAILDGITMGCGSGISLPGMFRVVTDKTIFSHPETQIGFHPDAGASYILSRLPGYLGEYLALTGDKLNGVEMIACRLATHYSLNARLALLEERLGKLITDEPSVVEASLAQYGDLVYPDRSSVLHRIDTIDRCFSQETVEEIIEALGKEATESCDEWCLNTLRRIREASPLSLKVTLQSIREGRFETLDKCLIREYRMSLRGISKLVSSDFFEGVRARMVDKDFAPKWDPPSLKDISEDMIEYYFSPLSEVQSELVLPTALREPYM* >Glyma14g11860.2 sequence type=predicted peptide gene model=Glyma14g11860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQRFKALLPQQTRSSLRTFCSHRRAFSAQPNYSEHHDDDSQEQILVEGRAKSRAAILNRPSSLNSLNASMVARLKRLYDSWEENSDIGFVLMKGSGRAFCSGADVVRLYQSLNEGNTDEAEQFFKTLYSFVYLQGTYLKPHVAILDGITMGCGSGISLPGMFRVVTDKTIFSHPETQIGFHPDAGASYILSRLPGYLGEYLALTGDKLNGVEMIACRLATHYSLNARLALLEERLGKLITDEPSVVEASLAQYGDLVYPDRSSVLHRIDTIDRCFSQETVEEIIEALGKEATESCDEWCLNTLRRIREASPLSLKVTLQSIREGRFETLDKCLIREYRMSLRGISKLVSSDFFEGVRARMVDKDFAPKWDPPSLKDISEDMIEYYFSPLSEVQSELVLPTALREPYM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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