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Report for Sequence Feature Glyma14g11721

Feature Type:gene_model
Chromosome:Gm14
Start:10259808
stop:10267305
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g11721
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G18193AT Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:7917621-7919184 REVERSE LENGTH=495 SoyBaseE_val: 1.00E-83ISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016887GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity SoyBaseN/AISS
GO:0017111GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity SoyBaseN/AISS
PTHR23070Panther BCS1 AAA-TYPE ATPASE JGI ISS
PTHR23070:SF1Panther AAA-TYPE ATPASE-RELATED JGI ISS
PF00004PFAM ATPase family associated with various cellular activities (AAA) JGI ISS
UniRef100_G7KF10UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cell division protease ftsH-like protein n=1 Tax=Medicago truncatula RepID=G7KF10_MEDTR SoyBaseE_val: 4.00E-104ISS
UniRef100_I1M985UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M985_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma14g11721
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g11721 not represented in the dataset
Glyma14g11721 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g11721
ParalogEvidenceComments
Glyma17g34060 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g11721 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g101600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g11721
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g11721
>Glyma14g11721.1   sequence type=CDS   gene model=Glyma14g11721   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGTTTCACTTCAGATCAACCAGTTTTGGGATCGCCAAACCAACCAAGTCCCAAGCTGCCCAAGACTATCTCCCTGCTAGGATAACACACTGTTACAAATCCCTCAAAGTTGGCAAACTAATGCAGCAGAAGAACATTGTAGTGGCCTTGGATGGAAAGCAAGAGGTGGTGGATCAATTTGAAGACATCAAACTCAGGGTTATGGGGGTAACTGTAATGTGGGGCAGTAGGCACTGTTGGCAGAAAACCAAGTTAACACATCCAGCCTCAATGGATTTTCAGCAAAAACATGCCATAGTTGATGATTTGGATCGGTTTTTGAGAAGAAAAAAGATGTATAAGAAAGTTGGTAAGCCTTGGAAACGTGGCTACCTCTTGTATGGGCCTAAAGGGACAGGAAAATCTAGCCTTGTTGTAGCTATGGCTAACTATTTGAAGTTTGATGTGTATGATTTGGAGCTAGGTTCTTTGTGTTCTAACTCAGACCTCATGTGTGCCTTGAGGGACATGTCTAACCATTCCATTGTTGTGATTGAAGACATAGATTGCTACAAAGAGGTTAACACAAAGAGGTTTACTCTGTCGGGTCTACTTAACATCATGGATGACTTGTGGTCAAGTGGTGGATACAAGCAAATTATAATCTTCACTAGCAACCATAGAGAAAGAATTGACCCTGCATTGCTATGCCTTGGTCGTAAGGACATGCACATTCACTTGTCCTTCCTCAAAGGCAATGCATTTCGAATCCTTGCTTCCAATTATTTAGGAATTGAAGGACATCATCCACTTTTTGAACAAATCGAAGGGCTATTGGAGAAAGTAGAAGTCACACCTGCAGTAGTGGCAGAGCAACTAATGAGAAATGAAGATCCTGATGTTGCTTTGGAAGCACTTGTTAAATTTCTCAAAGAAATGGACAAGGAAAAAGCCTGCATTTAG
Predicted protein sequences of Glyma14g11721
>Glyma14g11721.1   sequence type=predicted peptide   gene model=Glyma14g11721   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRFHFRSTSFGIAKPTKSQAAQDYLPARITHCYKSLKVGKLMQQKNIVVALDGKQEVVDQFEDIKLRVMGVTVMWGSRHCWQKTKLTHPASMDFQQKHAIVDDLDRFLRRKKMYKKVGKPWKRGYLLYGPKGTGKSSLVVAMANYLKFDVYDLELGSLCSNSDLMCALRDMSNHSIVVIEDIDCYKEVNTKRFTLSGLLNIMDDLWSSGGYKQIIIFTSNHRERIDPALLCLGRKDMHIHLSFLKGNAFRILASNYLGIEGHHPLFEQIEGLLEKVEVTPAVVAEQLMRNEDPDVALEALVKFLKEMDKEKACI*






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