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Report for Sequence Feature Glyma14g11711

Feature Type:gene_model
Chromosome:Gm14
Start:10253567
stop:10258495
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g11711
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G31180AT Annotation by Michelle Graham. TAIR10: Class II aminoacyl-tRNA and biotin synthetases superfamily protein | chr4:15156696-15159362 FORWARD LENGTH=558 SoyBaseE_val: 0ISS
GO:0000741GO-bp Annotation by Michelle Graham. GO Biological Process: karyogamy SoyBaseN/AISS
GO:0006094GO-bp Annotation by Michelle Graham. GO Biological Process: gluconeogenesis SoyBaseN/AISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006418GO-bp Annotation by Michelle Graham. GO Biological Process: tRNA aminoacylation for protein translation SoyBaseN/AISS
GO:0006422GO-bp Annotation by Michelle Graham. GO Biological Process: aspartyl-tRNA aminoacylation SoyBaseN/AISS
GO:0009560GO-bp Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0051604GO-bp Annotation by Michelle Graham. GO Biological Process: protein maturation SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0004812GO-mf Annotation by Michelle Graham. GO Molecular Function: aminoacyl-tRNA ligase activity SoyBaseN/AISS
GO:0004815GO-mf Annotation by Michelle Graham. GO Molecular Function: aspartate-tRNA ligase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
KOG0556 KOG Aspartyl-tRNA synthetase JGI ISS
PTHR22594Panther ASPARTYL/LYSYL-TRNA SYNTHETASE JGI ISS
PTHR22594:SF10Panther SUBFAMILY NOT NAMED JGI ISS
PF00152PFAM tRNA synthetases class II (D, K and N) JGI ISS
PF01336PFAM OB-fold nucleic acid binding domain JGI ISS
UniRef100_G7I885UniRef Annotation by Michelle Graham. Most informative UniRef hit: Aspartyl-tRNA synthetase n=1 Tax=Medicago truncatula RepID=G7I885_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1M984UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M984_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma14g11711
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g11711 not represented in the dataset
Glyma14g11711 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g11711
ParalogEvidenceComments
Glyma17g34070 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g11711 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g101500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g11711
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g11711
>Glyma14g11711.1   sequence type=CDS   gene model=Glyma14g11711   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTCTTCGGAGTTCCAAGACCCCGCCGCCGCCGCATCATCGGAGGCCCAAGTCAGCAAAAAGGCGGCTAAGAAGGAGGCCGCGAAGCTGGAGAAGCTCCGCCGCCGCCAGGAAATCGCCACCGCATCCGCCGCCACGGCCAACCTCTCCGTCGACGAGGAGGACCCTCTCGGCGGAAACTATGGCGACGTGCCGCTGGTGGAGCTGCAGTCTAAGACATCGGCAGACGTCGGCGAGTGGACGCGAGTGGAGGCGCTCGGCGGCGCGCTGGAGAACAGGTCAGTGCTGATTCGCGGGAGGGCGCAGGCGATTCGCCCCGTCGGGAAGAAGATGGCGTTTTTGGTCATCAGAGAGAATGGCTTCACCGTTCAATGCTTGGTGCAGGCGCAGGCCGATACGGTGAGCCCGCAGATGGTGAAGTTCGCCGCTGCACTCAGCCGCGAGTCCATCGTCGATGTCGAAGGCGTTGTTTCGATCCCCTCCGCTCCCATCAAAGGCGCCACACAACAGGTGGAAATTCAAGTGAGGAAGTTGTATTGTGTCAGTAGGGCTGTACCTACTCTGCCTATTAATCTTGAGGATGCTGCTCGAAGTGAAGTTGAAATCGAGACGGCTCTTCAGGCTGGTGAGCAACTTGTTCGTGTTAATCAGGATACACGTCTGAACTTTAGGGTGCTTGATGTGCGAACGCCAGCTAATCAAGGGATTTTCCGCATTCAGTCTCAAGTTGGAAATGCGTTTAGACAATTCTTATTATCTGAAGGTTTTTGTGAAATCCACACTCCAAAGTTGATAGCTGGATCTAGTGAGGGAGGAGCTGCTGTTTTTAGACTGGACTACAAAGGTCAACCTGCATGCCTGGCCCAGTCACCTCAGCTTCACAAGCAAATGTCTATTTGTGGAGATTTTGGCCGTGTTTTTGAGATTGGTCCTGTGTTTAGAGCAGAAGATTCCTACACTCACAGGCATCTGTGTGAGTTTACAGGTCTTGATGTTGAAATGGAGATTAAGAAGCATTACTTTGAGGTTATGGATATAGTCGATAGATTGTTTGTCGCAATGTTTGACAGTTTGAACCAGAATTGTAAGAAGGATCTGGAAGCTGTCGGGTCTCAGTATCCATTTGAACCTTTGAAGTATCTGCGGACGACACTACGGCTTACATATGAAGAAGGGATTCAGATGCTCAAGGATGTTGGAGTAGAAATTGAACCTTATGGTGACTTGAATACTGAAGCGGAAAGGAAATTGGGTCAGCTAGTCTCAGAGAAATATGGCACAGAGTTCTATATCCTTCACCGGTACCCTTTGGCTGTAAGGCCATTCTATACAATGCCTTGCTACGACAATCCTGCATACAGCAACTCGTTTGATGTCTTTATTCGAGGTGAGGAGATAATTTCAGGAGCTCAGCGTGTTCATGTGCCAGAATTTTTGGAACAACGTGCAGCAGCTTGTGGCATCGATGTCAAAACAATATCTACATACATTGATTCTTTCAGATATGGGGCACCACCACATGGTGGCTTTGGAGTAGGGTTGGAGCGTGTAGTGATGCTCTTCTGTGGCCTGAATAACATTCGCAAAACATCACTCTTTCCTCGTGACCCACTTAGGATTGCGCCATGA
Predicted protein sequences of Glyma14g11711
>Glyma14g11711.1   sequence type=predicted peptide   gene model=Glyma14g11711   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSSEFQDPAAAASSEAQVSKKAAKKEAAKLEKLRRRQEIATASAATANLSVDEEDPLGGNYGDVPLVELQSKTSADVGEWTRVEALGGALENRSVLIRGRAQAIRPVGKKMAFLVIRENGFTVQCLVQAQADTVSPQMVKFAAALSRESIVDVEGVVSIPSAPIKGATQQVEIQVRKLYCVSRAVPTLPINLEDAARSEVEIETALQAGEQLVRVNQDTRLNFRVLDVRTPANQGIFRIQSQVGNAFRQFLLSEGFCEIHTPKLIAGSSEGGAAVFRLDYKGQPACLAQSPQLHKQMSICGDFGRVFEIGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYFEVMDIVDRLFVAMFDSLNQNCKKDLEAVGSQYPFEPLKYLRTTLRLTYEEGIQMLKDVGVEIEPYGDLNTEAERKLGQLVSEKYGTEFYILHRYPLAVRPFYTMPCYDNPAYSNSFDVFIRGEEIISGAQRVHVPEFLEQRAAACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPLRIAP*






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