SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G26310 | AT | Annotation by Michelle Graham. TAIR10: Chalcone-flavanone isomerase family protein | chr2:11201770-11203919 FORWARD LENGTH=398 | SoyBase | E_val: 2.00E-111 | ISS |
| GO:0042398 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular modified amino acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0005504 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: fatty acid binding | SoyBase | N/A | ISS |
| PF02431 | PFAM | Chalcone-flavanone isomerase | JGI | ISS | |
| UniRef100_I3SC89 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Medicago truncatula RepID=I3SC89_MEDTR | SoyBase | E_val: 1.00E-179 | ISS |
| UniRef100_Q58G09 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Chalcone-flavanone isomerase-like protein n=2 Tax=Arabidopsis thaliana RepID=Q58G09_ARATH | SoyBase | E_val: 9.00E-109 | ISS |
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Glyma14g11151 not represented in the dataset |
Glyma14g11151 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g34435 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g098100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g11151.2 sequence type=transcript gene model=Glyma14g11151 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATCCTCTTTGACCCATTCCCTGTCCAAAGCTTATTCCCCCTCTTCTTTAATTCCCTTTCTCTCATAACAAAAACATCGCCAATATTCACGTCGCGATTCGCGAAAACCGAAAAGCTTAATCGCTTCTCATTCAATTCCCGGATCCAAACAGAACCCATTATTTTCCTTTCCGTTTTCTCATTTTCTCATTCTCCTTTCAATTTCAGCGATCGATCGCGTGCGTGCGTCCGTCGCGATGAACAACGATTTCCTTTGGCTTCCATCGCTATACTCGGATCCGGAAGTGTTCACGTATTTAGAACCCTTCGTGTTCCGCAGCTCTTCTCTGAGCTCGCATTTTCTGCATTCGCTGGCGACAAATTCCCGAAGCTTCGCGCTCGAGGAGGCGTTCGGACATGTGTCGCGGTTCTCCGGCGCGTTGCTGTTCTGGCTCTCGCGCGCGTCGAGCTCCAATGTGGCGCGTTCCTTGCGCGGTTCGCCGCCGCTCCGGTTCGGTAGCGTGCAGGTTAAGGCTGGGTCGACGACGAATGTGCGCGTGTTCGGGTTTCCGTTCGGATCGAAGTGGAAATCGTCGTTTTCGAGTGTGAGGTTGGGGAAGATTTCGAGTTTGGCGATGAGGATGATTTGGAGAGAAGCGAAGAGGCTTAGCTTGTTCCCCGTTCTGTCGCTGGCTGTTGCGTTGGTTCCACCGTTTCAAAACTTGTCATCAAATGTACTAGCTAGCCCGTTGCTCAATCCTGATGTGCAAATTTTTGGAGCCATGGACCAAGTGCCTAAGGAAGTTGAATGCCAAGGATGTTCGTTTCTACCGTGTCTTGAGTTGAGCCAGGCAAAACCTGCAGTGGAGCCTAAAACTGGTATTGAATTTCCTTTGGTTCTAGACAATCTATTCACTGGAGAGAAGAATTACAACTTAAACTCTGAGGTCCTGGTTGGAACAGGATCCAGAACCATGACAATTGTTAAAATCAAGTCACTGAAGGTCTATGCTTTTGGAGTTTATGTTCATCCATATTCCCTCTGTGAGAAATTGGGGCCAAAATATGCATCAATTTCTGCTGATGAATTGAATAACCATCATGACTTCTACAAGGATCTTCTCAGGGAGGATATCAATATGACTGTTAGACTTGTTGCAAATTGCAGGGGTATGAAAATTAACAGCGTGAAAGATGCTTTTGAAAAATCACTTCGAGCTCGATTAGTAAAGGCAAATCCATCCACAGACTTTAGTTGCCTAAAGACATTTGGTTCATACTTCACAGAGAATATCTCAATTCCTTTGGGAACAGTAATTGAGTTCAAACGAACAGTTGATGGACGTCTGATCACTAAAATTAGTGGGAATCAGATAGGAAGTGTTCACAGCAAAGATTTGTGTCGGGCTTTCTTTGACATGTACATTGGAGATGTCCCTGTGTGTGAACAAACTAAAAAGGAGATTGGCATGAATGCTGCAAATATTATTAACAAGTGCTAAAACGATTCATTTTGTATCCACTTGTCCTACTTTTAGAATGGACAATTGGACATGGGTAGCATGGCAAATTGGCGTATACCCTTAACTTATAGAAGCAGTGGTTTCTTGAAATTGATTTCAACCTGCTTTAAAAATCATTTGCAGGCATTACTTCTCAAGGTTTGTCCTTTGAATCATAGAAGTCTTTAGGATAGCTTAAATTGGATTTTCATTGGAAAGTTCTCTGTTCCTATTGATTATATCATTTCATCGCCTTGATGCCCCTATCCCTTTTGTTAGATGTATACTGTTTTAGAGAATGAAAAGGAAAAAAATGCAGATAAGAATGTTTGTGCCCGTTTGCTCAAGCAAATAAGTATTTGCTACCTTTATATTCAGTGTAGTAATGCGTTTAACTAGCATTTCCCGTTGATACGATCGGGAAATGCTATACAAAGCAGGGATTAGATTTTATTGACTTGGCAGCATTTCTTGTTGGAGAATGTATGAAACTTTAAGCGTGTGTTTGGAGTGGCGTTTTTAATGCACACAAGTTCCAATTTGCACGTCAAAATTGTATAAGCCGCAAAAGTTAAAGAGAGAAGCTTTGAACTGAACACGGATCAGATTGTGGCTGACGCGTAACTGTAGTGGACACATAACTAAACGCATGGTAGATGTGTTGTCCTTCCAAAAAATGTGAGTTTATTGAATTTAAATGTGACTGGTGTGATCCTTATGTTGTATGTATAATTTGTCTTTTTATGTTTGTTGCATGGTAACCGATTCTTTTCTCTGCTTCCTAAACTTGTAGGTCGCTAAGTTGTGTAGGTTGCCAAAAATGGATTCATGGTCCCCCAATGTATGTGTCTTGCATGTGCAATGTAATTAAGATTTTTTTAATTAGTTATATACAGTTACTATGTACAGAGGTGATTAGTCATTGTTTAAAACTCTTAGTAACTCCTTTGCAAATGGTAACTATTCACATACATCACGGAGGTAACTTTGTTAAAGGAAAACATGGTAAACTTGCCGATGAATGGAGCCGAGTAGATGTATTGCCTGGATATGATAATGATATGCTTGATGTTTTTAGTACATTAATGATCTTTAATATCCTTATGTATCAAATTTTTATGTTAACTGCTAAAAGTAGATGCAGACCTTATTAAGATGGTGAATGTTTCTACTAAGAACTATGACTCATAAGGGGTACATTCATGTTTATTACAAGCATCCTATTTATAAACCATAAGAGGCACAACGTGTTGAAGACATTGTAAAAGGGAATAAATTAAATATAGATAGACTGGATTTAATTGATGATAAGGAACTAAATTACTTACTTTTATACTTAAATATAAGCAAAAAGAAGTTATCTTGTAGGTGAGTTTGTTTAAATTTTCAAAAAATAACTTTACAATAAACATTATATATATATATATATATATTAAAAAGCAGATAGGATTTGTTTCTTAAAATATGTAGAAAATTATTTTTTTAAGTAGAAGTAATTTAGACAAATACTAAAAAAATAGAAAATTGTTTATTTTA
>Glyma14g11151.1 sequence type=CDS gene model=Glyma14g11151 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACAACGATTTCCTTTGGCTTCCATCGCTATACTCGGATCCGGAAGTGTTCACGTATTTAGAACCCTTCGTGTTCCGCAGCTCTTCTCTGAGCTCGCATTTTCTGCATTCGCTGGCGACAAATTCCCGAAGCTTCGCGCTCGAGGAGGCGTTCGGACATGTGTCGCGGTTCTCCGGCGCGTTGCTGTTCTGGCTCTCGCGCGCGTCGAGCTCCAATGTGGCGCGTTCCTTGCGCGGTTCGCCGCCGCTCCGGTTCGGTAGCGTGCAGGTTAAGGCTGGGTCGACGACGAATGTGCGCGTGTTCGGGTTTCCGTTCGGATCGAAGTGGAAATCGTCGTTTTCGAGTGTGAGGTTGGGGAAGATTTCGAGTTTGGCGATGAGGATGATTTGGAGAGAAGCGAAGAGGCTTAGCTTGTTCCCCGTTCTGTCGCTGGCTGTTGCGTTGGTTCCACCGTTTCAAAACTTGTCATCAAATGTACTAGCTAGCCCGTTGCTCAATCCTGATGTGCAAATTTTTGGAGCCATGGACCAAGTGCCTAAGGAAGTTGAATGCCAAGGATGTTCGTTTCTACCGTGTCTTGAGTTGAGCCAGGCAAAACCTGCAGTGGAGCCTAAAACTGGTATTGAATTTCCTTTGGTTCTAGACAATCTATTCACTGGAGAGAAGAATTACAACTTAAACTCTGAGGTCCTGGTTGGAACAGGATCCAGAACCATGACAATTGTTAAAATCAAGTCACTGAAGGTCTATGCTTTTGGAGTTTATGTTCATCCATATTCCCTCTGTGAGAAATTGGGGCCAAAATATGCATCAATTTCTGCTGATGAATTGAATAACCATCATGACTTCTACAAGGATCTTCTCAGGGAGGATATCAATATGACTGTTAGACTTGTTGCAAATTGCAGGGGTATGAAAATTAACAGCGTGAAAGATGCTTTTGAAAAATCACTTCGAGCTCGATTAGTAAAGGCAAATCCATCCACAGACTTTAGTTGCCTAAAGACATTTGGTTCATACTTCACAGAGAATATCTCAATTCCTTTGGGAACAGTAATTGAGTTCAAACGAACAGTTGATGGACGTCTGATCACTAAAATTAGTGGGAATCAGATAGGAAGTGTTCACAGCAAAGATTTGTGTCGGGCTTTCTTTGACATGTACATTGGAGATGTCCCTGTGTGTGAACAAACTAAAAAGGAGATTGGCATGAATGCTGCAAATATTATTAACAAGTGCTAA >Glyma14g11151.2 sequence type=CDS gene model=Glyma14g11151 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACAACGATTTCCTTTGGCTTCCATCGCTATACTCGGATCCGGAAGTGTTCACGTATTTAGAACCCTTCGTGTTCCGCAGCTCTTCTCTGAGCTCGCATTTTCTGCATTCGCTGGCGACAAATTCCCGAAGCTTCGCGCTCGAGGAGGCGTTCGGACATGTGTCGCGGTTCTCCGGCGCGTTGCTGTTCTGGCTCTCGCGCGCGTCGAGCTCCAATGTGGCGCGTTCCTTGCGCGGTTCGCCGCCGCTCCGGTTCGGTAGCGTGCAGGTTAAGGCTGGGTCGACGACGAATGTGCGCGTGTTCGGGTTTCCGTTCGGATCGAAGTGGAAATCGTCGTTTTCGAGTGTGAGGTTGGGGAAGATTTCGAGTTTGGCGATGAGGATGATTTGGAGAGAAGCGAAGAGGCTTAGCTTGTTCCCCGTTCTGTCGCTGGCTGTTGCGTTGGTTCCACCGTTTCAAAACTTGTCATCAAATGTACTAGCTAGCCCGTTGCTCAATCCTGATGTGCAAATTTTTGGAGCCATGGACCAAGTGCCTAAGGAAGTTGAATGCCAAGGATGTTCGTTTCTACCGTGTCTTGAGTTGAGCCAGGCAAAACCTGCAGTGGAGCCTAAAACTGGTATTGAATTTCCTTTGGTTCTAGACAATCTATTCACTGGAGAGAAGAATTACAACTTAAACTCTGAGGTCCTGGTTGGAACAGGATCCAGAACCATGACAATTGTTAAAATCAAGTCACTGAAGGTCTATGCTTTTGGAGTTTATGTTCATCCATATTCCCTCTGTGAGAAATTGGGGCCAAAATATGCATCAATTTCTGCTGATGAATTGAATAACCATCATGACTTCTACAAGGATCTTCTCAGGGAGGATATCAATATGACTGTTAGACTTGTTGCAAATTGCAGGGGTATGAAAATTAACAGCGTGAAAGATGCTTTTGAAAAATCACTTCGAGCTCGATTAGTAAAGGCAAATCCATCCACAGACTTTAGTTGCCTAAAGACATTTGGTTCATACTTCACAGAGAATATCTCAATTCCTTTGGGAACAGTAATTGAGTTCAAACGAACAGTTGATGGACGTCTGATCACTAAAATTAGTGGGAATCAGATAGGAAGTGTTCACAGCAAAGATTTGTGTCGGGCTTTCTTTGACATGTACATTGGAGATGTCCCTGTGTGTGAACAAACTAAAAAGGAGATTGGCATGAATGCTGCAAATATTATTAACAAGTGCTAA
>Glyma14g11151.1 sequence type=predicted peptide gene model=Glyma14g11151 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNNDFLWLPSLYSDPEVFTYLEPFVFRSSSLSSHFLHSLATNSRSFALEEAFGHVSRFSGALLFWLSRASSSNVARSLRGSPPLRFGSVQVKAGSTTNVRVFGFPFGSKWKSSFSSVRLGKISSLAMRMIWREAKRLSLFPVLSLAVALVPPFQNLSSNVLASPLLNPDVQIFGAMDQVPKEVECQGCSFLPCLELSQAKPAVEPKTGIEFPLVLDNLFTGEKNYNLNSEVLVGTGSRTMTIVKIKSLKVYAFGVYVHPYSLCEKLGPKYASISADELNNHHDFYKDLLREDINMTVRLVANCRGMKINSVKDAFEKSLRARLVKANPSTDFSCLKTFGSYFTENISIPLGTVIEFKRTVDGRLITKISGNQIGSVHSKDLCRAFFDMYIGDVPVCEQTKKEIGMNAANIINKC* >Glyma14g11151.2 sequence type=predicted peptide gene model=Glyma14g11151 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNNDFLWLPSLYSDPEVFTYLEPFVFRSSSLSSHFLHSLATNSRSFALEEAFGHVSRFSGALLFWLSRASSSNVARSLRGSPPLRFGSVQVKAGSTTNVRVFGFPFGSKWKSSFSSVRLGKISSLAMRMIWREAKRLSLFPVLSLAVALVPPFQNLSSNVLASPLLNPDVQIFGAMDQVPKEVECQGCSFLPCLELSQAKPAVEPKTGIEFPLVLDNLFTGEKNYNLNSEVLVGTGSRTMTIVKIKSLKVYAFGVYVHPYSLCEKLGPKYASISADELNNHHDFYKDLLREDINMTVRLVANCRGMKINSVKDAFEKSLRARLVKANPSTDFSCLKTFGSYFTENISIPLGTVIEFKRTVDGRLITKISGNQIGSVHSKDLCRAFFDMYIGDVPVCEQTKKEIGMNAANIINKC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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