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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma14g11062

Feature Type:gene_model
Chromosome:Gm14
Start:9369033
stop:9372823
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g11062
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G11950AT Annotation by Michelle Graham. TAIR10: Putative lysine decarboxylase family protein | chr5:3855072-3856815 FORWARD LENGTH=216 SoyBaseE_val: 4.00E-38ISS
GO:0009089GO-bp Annotation by Michelle Graham. GO Biological Process: lysine biosynthetic process via diaminopimelate SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0042803GO-mf Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity SoyBaseN/AISS
PF03641PFAM Possible lysine decarboxylase JGI ISS
UniRef100_G7I9V5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Lysine decarboxylase-like protein n=1 Tax=Medicago truncatula RepID=G7I9V5_MEDTR SoyBaseE_val: 2.00E-36ISS
UniRef100_I1M942UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1M942_SOYBN SoyBaseE_val: 6.00E-42ISS

Expression Patterns of Glyma14g11062
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g11062 not represented in the dataset
Glyma14g11062 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g11062 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g097200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g11062
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g11062
>Glyma14g11062.1   sequence type=CDS   gene model=Glyma14g11062   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCTTGAGATATCTGGTGAACCAGTTGGTGAAGTAAGAATTGTTTCAGATATGCATGAGCCTAAAGCTGCAATGGCTCAAGGAGCTGATGCATTTATTGCTCTCCCAGGAGGATATGGAACTATGGAAGAGCTGTTGGAGATGATAACTTGGGCTCAACTTGGAATTCATAAAAAACAGGTTGGTCTACTAAATGTTGATGGTTACTATTTTGCTTGCATTATTTGA
Predicted protein sequences of Glyma14g11062
>Glyma14g11062.1   sequence type=predicted peptide   gene model=Glyma14g11062   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPLEISGEPVGEVRIVSDMHEPKAAMAQGADAFIALPGGYGTMEELLEMITWAQLGIHKKQVGLLNVDGYYFACII*






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