Glyma14g10940 - SoyBase

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Report for Sequence Feature Glyma14g10940

Feature Type:	gene_model
Chromosome:	Gm14
Start:	9144888
stop:	9149382
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g10940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G55110	AT	Annotation by Michelle Graham. TAIR10: indeterminate(ID)-domain 7 \| chr1:20560406-20562625 REVERSE LENGTH=455	SoyBase	E_val: 9.00E-112	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009617	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to bacterium	SoyBase	N/A	ISS
GO:0045087	GO-bp	Annotation by Michelle Graham. GO Biological Process: innate immune response	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR10593	Panther	SERINE/THREONINE-PROTEIN KINASE RIO	JGI		ISS
UniRef100_I1M933	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M933_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2HVE6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger, C2H2-type n=1 Tax=Medicago truncatula RepID=Q2HVE6_MEDTR	SoyBase	E_val: 1.00E-125	ISS

Expression Patterns of Glyma14g10940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g10940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g095900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g10940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g10940

Limit To All Plant Sequences

>Glyma14g10940.1   sequence type=CDS   gene model=Glyma14g10940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCAATTTGACGTCTGCATCCAGTGAAATAAGTGCTTCTTCAGGAATCAGGAATGACAACGGTTCTTCTCTCTATGCTCAATATTCCTCTACTTCAATAAGTCAAGAACCACAACCTAAAAAGAAGCGAAGTCTTCCAGGTCACCCAGACCCTGAGGCAGAAGTGATAGCATTGACTCCGCGGACCCTTTTGGCAACAAACAGGTTCGTTTGTGAGATATGTCACAAAGGGTTTCAGAGAGACCAGAACTTGCAGCTTCATAGAAGAGGGCACAATTTGCCATGGAAGCTGAAGAAAAAGAGCAGCAAAGACGACGTGAGAAAGAAAGTGTATGTGTGCCCAGAGGCAACATGCGTTCACCATGACCCTTCAAGGGCCCTTGGGGACCTCACTGGAATCAAGAAGCACTTTTTCAGGAAACACGGAGAGAAGAAATGGAGGTGTGAGAAGTGCTCCAAACTCTACGCGGTTCAATCAGATTGGAAAGCCCACTCCAAAATCTGTGGCACCAAAGAATATAAATGCGACTGTGGTACCCTTTTCTCTAGGAGGGACAGCTTTATCACTCACAGAGCCTTCTGTGATGCCTTAGCACAGGAAAGTAGTAGAGTAGTGAACCCTCACCCTCTTCTATCAACTCAATTTCGTAGTCATGGCCTTCAGCTTCAAGCACCATCACTTCTGAAAAGAGAACATGATCACTTCAACTTATTAACCTCAGAAATTCCATCATGGTTAACTTCTCCAACAGTGGTAGAAGAAGCAATATTGCTAAACAATCAAACCATAAGAACCACCTCAGATTACTTCTCCAAACCACAGTTATTCCCAACAGCACATGTCAACAATAACCACTCCTTACTCCATGATCAAAACCCTAACCCTAATACTACTACAACAACCACTTTTCTTTCTTCTTTGAGTTCCTTCCCTAATTATTCCACTTCTTCTTCTTCTTCTCCTCACATGTCAGCGGCTTTGTTGCAAAAAGCCTCACAAATAGGCGAAACAGTGAGCAGTGCACCTTCACAAGCGATGCTGGTTAGACCCCACTTGTTACTGCAGCAGCAGGTTCACGTGCCCGAATGTACAACAACAACAGCAATTGCAACAACAGGGTATAATATCAATATGGCTTCATCTTCAGCCGTTTCTGGAATGGTTATTATGCCTTCACGTGAAGAAATAGGGGCTCTTGGGTTTGCTAGTGGCATGGCATCTTGA

Predicted protein sequences of Glyma14g10940

Limit To All Plant Sequences

>Glyma14g10940.1   sequence type=predicted peptide   gene model=Glyma14g10940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNLTSASSEISASSGIRNDNGSSLYAQYSSTSISQEPQPKKKRSLPGHPDPEAEVIALTPRTLLATNRFVCEICHKGFQRDQNLQLHRRGHNLPWKLKKKSSKDDVRKKVYVCPEATCVHHDPSRALGDLTGIKKHFFRKHGEKKWRCEKCSKLYAVQSDWKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDALAQESSRVVNPHPLLSTQFRSHGLQLQAPSLLKREHDHFNLLTSEIPSWLTSPTVVEEAILLNNQTIRTTSDYFSKPQLFPTAHVNNNHSLLHDQNPNPNTTTTTTFLSSLSSFPNYSTSSSSSPHMSAALLQKASQIGETVSSAPSQAMLVRPHLLLQQQVHVPECTTTTAIATTGYNINMASSSAVSGMVIMPSREEIGALGFASGMAS*

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