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Report for Sequence Feature Glyma14g10780

Feature Type:gene_model
Chromosome:Gm14
Start:8978812
stop:8982664
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g10780
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G11840AT Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1230) | chr5:3813610-3814805 REVERSE LENGTH=265 SoyBaseE_val: 2.00E-97ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0015996GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF06799PFAM Protein of unknown function (DUF1230) JGI ISS
UniRef100_I1M917UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M917_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9FN15UniRef Annotation by Michelle Graham. Most informative UniRef hit: Gb|AAC18972.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FN15_ARATH SoyBaseE_val: 2.00E-38ISS

Expression Patterns of Glyma14g10780
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g10780 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g094200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g10780
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g10780
>Glyma14g10780.1   sequence type=CDS   gene model=Glyma14g10780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAATAAGAGGCATAGGAATGTCGTTCTCTGCTCCATCAACAACAAGACCCATACTTTCCCTCAACCCACGATTCCTTTCAGCGTCATCCACAATCCCATTATTTCTCGTTCCCAGCAGAAGCAGTTATCTGTTATTATCGTTCTCTTTCAGCAGGCCCGAAACAGAGTGCCCTGTTCCGCACGAGCAGCAGCCCATCAACGAGTACCAGTCCCTCTCGACTTCGTTCCCGTTCTCGTGGGCCGCCGGCGACGTGGTGGAGTACGCCTCGCGCCTCTTCGTGACGGGGGCGTCCTTCGCGCTGCTGCTGGGCCTCCCCGTGGCCTGGTTCGGGTCCGCCGGGGCCCAGGCCGAGCCCGCCAAGCGCCTCCTCTGCGCCGCCTCCAGCGGCCTCTTTGCTGTCACGCTCGCTGTCGTTAGGATGTATCTTGGCTGGGCTTATGTCGGGAATCGCTTGCTCAGTGCCACCGTTGAATATGAGGAGACTGGGTGGTATGATGGTCAGATTTGGGTGAAGACTGCTGAAGTTTTGGCCCGCGATAGACTCCTTGGATCATTTTTTGTCAAGCCTGTACTGGGCAGATTGAAAATTACTCTAGTGAGTCTTGCAACTTCATTACTTGTATGTGCACTTATCCTCATTAACATTGATGGGGACCAAAACCTGACATCAAAAGAACCTAGAGTTCGAGTTGTACCTGGAGTTTACAATGATGATTCTGCAAGATTATTTGAACCAGATGCCTTTCGTGATGAACTTGATCTTCAATAA
Predicted protein sequences of Glyma14g10780
>Glyma14g10780.1   sequence type=predicted peptide   gene model=Glyma14g10780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAIRGIGMSFSAPSTTRPILSLNPRFLSASSTIPLFLVPSRSSYLLLSFSFSRPETECPVPHEQQPINEYQSLSTSFPFSWAAGDVVEYASRLFVTGASFALLLGLPVAWFGSAGAQAEPAKRLLCAASSGLFAVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFFVKPVLGRLKITLVSLATSLLVCALILINIDGDQNLTSKEPRVRVVPGVYNDDSARLFEPDAFRDELDLQ*






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