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Report for Sequence Feature Glyma14g10580

Feature Type:gene_model
Chromosome:Gm14
Start:8779299
stop:8783642
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g10580
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G11730AT Annotation by Michelle Graham. TAIR10: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr5:3780963-3782473 FORWARD LENGTH=386 SoyBaseE_val: 0ISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
PF02485PFAM Core-2/I-Branching enzyme JGI ISS
UniRef100_I1M8Z3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M8Z3_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q1PDT4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein n=2 Tax=Arabidopsis thaliana RepID=Q1PDT4_ARATH SoyBaseE_val: 9.00E-176ISS

Expression Patterns of Glyma14g10580
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g10580
ParalogEvidenceComments
Glyma17g34930 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g10580 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g092400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g10580
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g10580
>Glyma14g10580.1   sequence type=CDS   gene model=Glyma14g10580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAATCAAGGGGTTTGACCCTTGAAGAGGGAAAGGAGAGAATCAACCAATCTAAACCTTTGAGACCAGTGCGGCTACTTGTGTTGTTTTTTGCTCTCTGTGTTGTGTTCTCATTGATTAGCATATACACTGTCAAGCATTTTGAAATTGAGAGTGTGGTGACCACAGTGAGTTCTAGTTTTCAGCCATGTTATTATGAGGAACCTGGTGGTTTGGATAAGTGGATTAGGCCACCTTCGAGCTCGATCCACAATATGAGTGACAAAGAGCTTCTGTGGAGGGCTTCCTTTGTTCCAAGGATCAAGGGTTACCCTTATCCTAGAGTTCCCAAGATCGCATTCATGTTCCTGACCAAGGGACCATTGCCTCTAGCACCCCTTTGGGAGAGGTTTCTCAAGGGGCATGAGAAGTTTTATTCCGTATATATTCATTCACTGCCCTCATACCAACCTCAGTTTCCTTCTTCATCTGTCTTTTACAACAGGCAAATCCCTAGCCAGGTTTCTGAGTGGGGAAGGATGAACATGTGCGATGCTGAAAGAAGACTCCTTGCTAATGCATTGCTTGATATCTCCAACGAGTGGTTCATTCTGCTGTCTGAATCATGCATCCCCCTCTACAAGTTCAGTTTTGTCTACCACTACATAATGAAATCCAAACACAGCTTTGTGGGTGCATTTGATGATCCTGGTCCATACGGAAGAGGGCGCTACAACGAGCACATGGCCCCTCTGGTGAATGTCACCAAGTGGCGCAAGGGCTCTCAATGGTTCGAAGTAAACCGGAAGCTCGCCATCACCATAGTTGAAGACACTACATTTCATCCAATATTTGAACAGTATTGTAGGCCGGCTTGTTACGTGGACGAGCACTATTTCCCCACCATGCTCACCATTCAAGCAGCCAATGTGTTGGCAAACAGGAGCATAACTTGGGTGGACTGGTCTAGGGGTGGAGCTCACCCTGCTACATTTGGAAGAAATGATATCACTGAGGAGTTTTTCAATAGAGTACGTGGAGGTCACATTTGCCTATACAACAATAGAAATTCTTCAGTTTGTGTTCTTTTTGCCAGAAAATTTGCTCCTAGTGCTTTGGAACCTTTGTTACATATGGTGGATTCAAAGGTTTTGGACTATTGA
Predicted protein sequences of Glyma14g10580
>Glyma14g10580.1   sequence type=predicted peptide   gene model=Glyma14g10580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQSRGLTLEEGKERINQSKPLRPVRLLVLFFALCVVFSLISIYTVKHFEIESVVTTVSSSFQPCYYEEPGGLDKWIRPPSSSIHNMSDKELLWRASFVPRIKGYPYPRVPKIAFMFLTKGPLPLAPLWERFLKGHEKFYSVYIHSLPSYQPQFPSSSVFYNRQIPSQVSEWGRMNMCDAERRLLANALLDISNEWFILLSESCIPLYKFSFVYHYIMKSKHSFVGAFDDPGPYGRGRYNEHMAPLVNVTKWRKGSQWFEVNRKLAITIVEDTTFHPIFEQYCRPACYVDEHYFPTMLTIQAANVLANRSITWVDWSRGGAHPATFGRNDITEEFFNRVRGGHICLYNNRNSSVCVLFARKFAPSALEPLLHMVDSKVLDY*






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