SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G25910 | AT | Annotation by Michelle Graham. TAIR10: 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein | chr2:11049379-11051997 REVERSE LENGTH=341 | SoyBase | E_val: 0 | ISS |
| GO:0006139 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleobase-containing compound metabolic process | SoyBase | N/A | ISS |
| GO:0006623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0008408 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 3'-5' exonuclease activity | SoyBase | N/A | ISS |
| PTHR12124 | Panther | POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED | JGI | ISS | |
| PF00013 | PFAM | KH domain | JGI | ISS | |
| PF01612 | PFAM | 3'-5' exonuclease | JGI | ISS | |
| UniRef100_B9RRW2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 3'-5' exonuclease, putative n=1 Tax=Ricinus communis RepID=B9RRW2_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M8Y6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M8Y6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma14g10520 not represented in the dataset |
Glyma14g10520 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g34990 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g091700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g10520.2 sequence type=transcript gene model=Glyma14g10520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTCCCTTTTATTCACCTACATGATAAATTCATAGTAATTCATAAATACACACACTTGGGGATTTTCTTTTTCTTTTCCGAAACACGGCGTTAAATTAAAATTAAAAAGTGTTGAATATTGAACGGAAAAAACAGTACCCATTTTCTTGTGTAGAAAAAAGAGAGCGAGAGCAGAAGAGAAGAGTGCAGCGCAAGCTTAGAAGAGCAAAGTGTGTGATGTGGTTGGACATTCAGTCCCAATCACATGGCTTCTTCTTCTCCTTCTCCTCCATCTTATCTCACACACCTTCCTCTTCATCCCTCTCACCAAGGTGAGAGTGAGAAGCGCGTGGAGGACGATGAATCGCGCGTTCCGATTCACATCGTGACCGCGGCGACGCAACTTCCCGTCGAATTTCTGGAACCCTCGCCTCAATCCAAGCTCGTCATCGGCTTTGACTGCGAGGGCGTTGACCTGTGTCGCAAAGGCACTCTCTGCGTAATGCAGCTTGCATTTCCGGATGCTGTGTACTTGGTTGATGCGATTGAAGGGGGAGAGGAGCTTATCATAGCGTGTAAGCCTGCACTTGAGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGGCATTATACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAGATTGCTTATTCACTTATAGAGGAGCAAGAAGGACGAAAGAGATTGCGAGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTGTGGCATATCATATGATGAGAAGGAAGAAGTTCGTGTCCTTCTTCGACAGGACCCCAAGTTTTGGACACACAGACCATTATCTGAACAAATGATCCGTGCTGCTGCTGATGATGTTCGTTTTCTTCTCTATATTTATCGCCAAATGATGGAGAAATTAAATGAGCGGTCTTTATGGTATCTTGCAGTCCATGGTGCCTTGTATTGCCGATGTTTCTGTTTGAATAGTAACAATTTTGCTGATTGGCCATCTCTACCTTCAATTCCAGATAACCTGAATGCTGATGGAAATGATCTCGAGGAAGAAATTCTTTCAGTTCTTGATATTCCCCAAGGAAAGATGGGACTTGTTATTGGGAAAAGAGGGGCAACAATTTTGTCAATTAAGCGGTCTTGCAATGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAGGTCTTCATCATCGGACCGGTGAAGGAGGTGAGGAAAGCCGAGGCCATGATTCGGGGTAGAATCTTGGATATATAGTTAAGAAATGTGTTACTTCTCTTTGAACCAAACTTCTGCAATAAATCATTTTTCTGATCCAATAGTTACTAGCTTACTGCCTCTGATAGTTGGACTGAGTTTTTAGGGGCAGGGGTCTGTTGTTCAATACTTGAAATTCCTTTTCCCATGCTTGTATCTACTGGAAAAGAGAAAAGAAAAAAGAAATAGTTTTCTTATCAACAAAACTGAATAATATTTGATCTGGAAGATATTTATTGGAATTAGAAAATAGACTTGCCCATATGGATTGCCACGAAATCAATCAGTTTGGAGCTCTGATGTTGTAAATGATAAATCAGATTGTGAAAATGAATGGGGGATCCTATCATAGGGTGCTTGTTCAAATTCTGTGAATCTATTTCTGACTTAAGTCACTAGTAGGGAGCTAGTCGGCGTCAATGATAGATTGATGGTATAAAATTTGTAAATAATTTCCAGACAAAAGAATGCGATTTATCAACCTATGATAAAAATAAAAATCAGTGTTAAAGGAAGTGTTTTTGAATTCGCTCTGCAGAAG >Glyma14g10520.3 sequence type=transcript gene model=Glyma14g10520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTCCCTTTTATTCACCTACATGATAAATTCATAGTAATTCATAAATACACACACTTGGGGATTTTCTTTTTCTTTTCCGAAACACGGCGTTAAATTAAAATTAAAAAGTGTTGAATATTGAACGGAAAAAACAGTACCCATTTTCTTGTGTAGAAAAAAGAGAGCGAGAGCAGAAGAGAAGAGTGCAGCGCAAGCTTAGAAGAGCAAAGTGTGTGATGTGGTTGGACATTCAGTCCCAATCACATGGCTTCTTCTTCTCCTTCTCCTCCATCTTATCTCACACACCTTCCTCTTCATCCCTCTCACCAAGGTGAGAGTGAGAAGCGCGTGGAGGACGATGAATCGCGCGTTCCGATTCACATCGTGACCGCGGCGACGCAACTTCCCGTCGAATTTCTGGAACCCTCGCCTCAATCCAAGCTCGTCATCGGCTTTGACTGCGAGGGCGTTGACCTGTGTCGCAAAGGCACTCTCTGCGTAATGCAGCTTGCATTTCCGGATGCTGTGTACTTGGTTGATGCGATTGAAGGGGGAGAGGAGCTTATCATAGCGTGTAAGCCTGCACTTGAGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGGCATTATACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAGATTGCTTATTCACTTATAGAGGAGCAAGAAGGACGAAAGAGATTGCGAGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTGCATATCATATGATGAGAAGGAAGAAGTTCGTGTCCTTCTTCGACAGGACCCCAAGTTTTGGACACACAGACCATTATCTGAACAAATGATCCGTGCTGCTGCTGATGATGTTCGTTTTCTTCTCTATATTTATCGCCAAATGATGGAGAAATTAAATGAGCGGTCTTTATGGTATCTTGCAGTCCATGGTGCCTTGTATTGCCGATGTTTCTGTTTGAATAGTAACAATTTTGCTGATTGGCCATCTCTACCTTCAATTCCAGTAGATAACCTGAATGCTGATGGAAATGATCTCGAGGAAGAAATTCTTTCAGTTCTTGATATTCCCCAAGGAAAGATGGGACTTGTTATTGGGAAAAGAGGGGCAACAATTTTGTCAATTAAGCGGTCTTGCAATGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAGGTCTTCATCATCGGACCGGTGAAGGAGGTGAGGAAAGCCGAGGCCATGATTCGGGGTAGAATCTTGGATATATAGTTAAGAAATGTGTTACTTCTCTTTGAACCAAACTTCTGCAATAAATCATTTTTCTGATCCAATAGTTACTAGCTTACTGCCTCTGATAGTTGGACTGAGTTTTTAGGGGCAGGGGTCTGTTGTTCAATACTTGAAATTCCTTTTCCCATGCTTGTATCTACTGGAAAAGAGAAAAGAAAAAAGAAATAGTTTTCTTATCAACAAAACTGAATAATATTTGATCTGGAAGATATTTATTGGAATTAGAAAATAGACTTGCCCATATGGATTGCCACGAAATCAATCAGTTTGGAGCTCTGATGTTGTAAATGATAAATCAGATTGTGAAAATGAATGGGGGATCCTATCATAGGGTGCTTGTTCAAATTCTGTGAATCTATTTCTGACTTAAGTCACTAGTAGGGAGCTAGTCGGCGTCAATGATAGATTGATGGTATAAAATTTGTAAATAATTTCCAGACAAAAGAATGCGATTTATCAACCTATGATAAAAATAAAAATCAGTGTTAAAGGAAGTGTTTTTGAATTCGCTCTGCAGAAG
>Glyma14g10520.1 sequence type=CDS gene model=Glyma14g10520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCTTCTTCTCCTTCTCCTCCATCTTATCTCACACACCTTCCTCTTCATCCCTCTCACCAAGGTGAGAGTGAGAAGCGCGTGGAGGACGATGAATCGCGCGTTCCGATTCACATCGTGACCGCGGCGACGCAACTTCCCGTCGAATTTCTGGAACCCTCGCCTCAATCCAAGCTCGTCATCGGCTTTGACTGCGAGGGCGTTGACCTGTGTCGCAAAGGCACTCTCTGCGTAATGCAGCTTGCATTTCCGGATGCTGTGTACTTGGTTGATGCGATTGAAGGGGGAGAGGAGCTTATCATAGCGTGTAAGCCTGCACTTGAGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGGCATTATACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAGATTGCTTATTCACTTATAGAGGAGCAAGAAGGACGAAAGAGATTGCGAGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTGTGGCATATCATATGATGAGAAGGAAGAAGTTCGTGTCCTTCTTCGACAGGACCCCAAGTTTTGGACACACAGACCATTATCTGAACAAATGATCCGTGCTGCTGCTGATGATGTTCGTTTTCTTCTCTATATTTATCGCCAAATGATGGAGAAATTAAATGAGCGGTCTTTATGGTATCTTGCAGTCCATGGTGCCTTGTATTGCCGATGTTTCTGTTTGAATAGTAACAATTTTGCTGATTGGCCATCTCTACCTTCAATTCCAGTAGATAACCTGAATGCTGATGGAAATGATCTCGAGGAAGAAATTCTTTCAGTTCTTGATATTCCCCAAGGAAAGATGGGACTTGTTATTGGGAAAAGAGGGGCAACAATTTTGTCAATTAAGCGGTCTTGCAATGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAGGTCTTCATCATCGGACCGGTGAAGGAGGTGAGGAAAGCCGAGGCCATGATTCGGGGTAGAATCTTGGATATATAG >Glyma14g10520.2 sequence type=CDS gene model=Glyma14g10520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCTTCTTCTCCTTCTCCTCCATCTTATCTCACACACCTTCCTCTTCATCCCTCTCACCAAGGTGAGAGTGAGAAGCGCGTGGAGGACGATGAATCGCGCGTTCCGATTCACATCGTGACCGCGGCGACGCAACTTCCCGTCGAATTTCTGGAACCCTCGCCTCAATCCAAGCTCGTCATCGGCTTTGACTGCGAGGGCGTTGACCTGTGTCGCAAAGGCACTCTCTGCGTAATGCAGCTTGCATTTCCGGATGCTGTGTACTTGGTTGATGCGATTGAAGGGGGAGAGGAGCTTATCATAGCGTGTAAGCCTGCACTTGAGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGGCATTATACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAGATTGCTTATTCACTTATAGAGGAGCAAGAAGGACGAAAGAGATTGCGAGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTGTGGCATATCATATGATGAGAAGGAAGAAGTTCGTGTCCTTCTTCGACAGGACCCCAAGTTTTGGACACACAGACCATTATCTGAACAAATGATCCGTGCTGCTGCTGATGATGTTCGTTTTCTTCTCTATATTTATCGCCAAATGATGGAGAAATTAAATGAGCGGTCTTTATGGTATCTTGCAGTCCATGGTGCCTTGTATTGCCGATGTTTCTGTTTGAATAGTAACAATTTTGCTGATTGGCCATCTCTACCTTCAATTCCAGATAACCTGAATGCTGATGGAAATGATCTCGAGGAAGAAATTCTTTCAGTTCTTGATATTCCCCAAGGAAAGATGGGACTTGTTATTGGGAAAAGAGGGGCAACAATTTTGTCAATTAAGCGGTCTTGCAATGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAGGTCTTCATCATCGGACCGGTGAAGGAGGTGAGGAAAGCCGAGGCCATGATTCGGGGTAGAATCTTGGATATATAG >Glyma14g10520.3 sequence type=CDS gene model=Glyma14g10520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCTTCTTCTCCTTCTCCTCCATCTTATCTCACACACCTTCCTCTTCATCCCTCTCACCAAGGTGAGAGTGAGAAGCGCGTGGAGGACGATGAATCGCGCGTTCCGATTCACATCGTGACCGCGGCGACGCAACTTCCCGTCGAATTTCTGGAACCCTCGCCTCAATCCAAGCTCGTCATCGGCTTTGACTGCGAGGGCGTTGACCTGTGTCGCAAAGGCACTCTCTGCGTAATGCAGCTTGCATTTCCGGATGCTGTGTACTTGGTTGATGCGATTGAAGGGGGAGAGGAGCTTATCATAGCGTGTAAGCCTGCACTTGAGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGGCATTATACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAGATTGCTTATTCACTTATAGAGGAGCAAGAAGGACGAAAGAGATTGCGAGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTGCATATCATATGATGAGAAGGAAGAAGTTCGTGTCCTTCTTCGACAGGACCCCAAGTTTTGGACACACAGACCATTATCTGAACAAATGATCCGTGCTGCTGCTGATGATGTTCGTTTTCTTCTCTATATTTATCGCCAAATGATGGAGAAATTAAATGAGCGGTCTTTATGGTATCTTGCAGTCCATGGTGCCTTGTATTGCCGATGTTTCTGTTTGAATAGTAACAATTTTGCTGATTGGCCATCTCTACCTTCAATTCCAGTAGATAACCTGAATGCTGATGGAAATGATCTCGAGGAAGAAATTCTTTCAGTTCTTGATATTCCCCAAGGAAAGATGGGACTTGTTATTGGGAAAAGAGGGGCAACAATTTTGTCAATTAAGCGGTCTTGCAATGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAGGTCTTCATCATCGGACCGGTGAAGGAGGTGAGGAAAGCCGAGGCCATGATTCGGGGTAGAATCTTGGATATATAG
>Glyma14g10520.1 sequence type=predicted peptide gene model=Glyma14g10520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASSSPSPPSYLTHLPLHPSHQGESEKRVEDDESRVPIHIVTAATQLPVEFLEPSPQSKLVIGFDCEGVDLCRKGTLCVMQLAFPDAVYLVDAIEGGEELIIACKPALESNYITKVIHDCKRDSEALYFQFGIKLNNVVDTQIAYSLIEEQEGRKRLRDDYISFVGLLADPRYCGISYDEKEEVRVLLRQDPKFWTHRPLSEQMIRAAADDVRFLLYIYRQMMEKLNERSLWYLAVHGALYCRCFCLNSNNFADWPSLPSIPVDNLNADGNDLEEEILSVLDIPQGKMGLVIGKRGATILSIKRSCNAEILTGGPKGPPDKVFIIGPVKEVRKAEAMIRGRILDI* >Glyma14g10520.2 sequence type=predicted peptide gene model=Glyma14g10520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASSSPSPPSYLTHLPLHPSHQGESEKRVEDDESRVPIHIVTAATQLPVEFLEPSPQSKLVIGFDCEGVDLCRKGTLCVMQLAFPDAVYLVDAIEGGEELIIACKPALESNYITKVIHDCKRDSEALYFQFGIKLNNVVDTQIAYSLIEEQEGRKRLRDDYISFVGLLADPRYCGISYDEKEEVRVLLRQDPKFWTHRPLSEQMIRAAADDVRFLLYIYRQMMEKLNERSLWYLAVHGALYCRCFCLNSNNFADWPSLPSIPDNLNADGNDLEEEILSVLDIPQGKMGLVIGKRGATILSIKRSCNAEILTGGPKGPPDKVFIIGPVKEVRKAEAMIRGRILDI* >Glyma14g10520.3 sequence type=predicted peptide gene model=Glyma14g10520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASSSPSPPSYLTHLPLHPSHQGESEKRVEDDESRVPIHIVTAATQLPVEFLEPSPQSKLVIGFDCEGVDLCRKGTLCVMQLAFPDAVYLVDAIEGGEELIIACKPALESNYITKVIHDCKRDSEALYFQFGIKLNNVVDTQIAYSLIEEQEGRKRLRDDYISFVGLLADPRYCISYDEKEEVRVLLRQDPKFWTHRPLSEQMIRAAADDVRFLLYIYRQMMEKLNERSLWYLAVHGALYCRCFCLNSNNFADWPSLPSIPVDNLNADGNDLEEEILSVLDIPQGKMGLVIGKRGATILSIKRSCNAEILTGGPKGPPDKVFIIGPVKEVRKAEAMIRGRILDI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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