SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G65790 | AT | Annotation by Michelle Graham. TAIR10: myb domain protein 68 | chr5:26323035-26324385 FORWARD LENGTH=374 | SoyBase | E_val: 8.00E-72 | ISS |
| GO:0000041 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transition metal ion transport | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009739 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus | SoyBase | N/A | ISS |
| GO:0009751 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| KOG0048 | KOG | Transcription factor, Myb superfamily | JGI | ISS | |
| PTHR10641 | Panther | MYB-RELATED | JGI | ISS | |
| PF00249 | PFAM | Myb-like DNA-binding domain | JGI | ISS | |
| UniRef100_E5RT62 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: R2R3-MYB transcription factor (Fragment) n=1 Tax=Lupinus albus RepID=E5RT62_LUPAL | SoyBase | E_val: 2.00E-83 | ISS |
| UniRef100_UPI000233E50C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E50C related cluster n=1 Tax=unknown RepID=UPI000233E50C | SoyBase | E_val: 1.00E-173 | ISS |
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Glyma14g10483 not represented in the dataset |
Glyma14g10483 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g35020 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g091500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g10483.2 sequence type=transcript gene model=Glyma14g10483 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TATATCTATTTCCATTTCCATAATTTGTACAATTTCCATGCCCACTAGTCCACTAGTAGACACCATTTTTCCGCATATGCCAGGCGTTATTTTTGAATCCGGGGTCAAAATTCATAAATACCTTGTGAAGCTTTCAAGACATGAAACAAGGAGCCTTAGACGGTGTGGCAAGAGTTGCCGGCTACGGTGGCTCAATTATCTGAGGCCAGACATCAAACATGGAGGCTTTACTGAAGAAGAGGACAACATCATTTGTACCCTCTATGCTGAGATGGGAAGCAGATGGTCTGCCATAGCCTCTAAACTTCCTGGCAGAACCGACAATGATGTGAAAAACTACTGGAACACGAAACTGAAGAAGAAGATCATGGCAGGGAAAGTTACCCTCAAAACATTGACTGACAATGACACGCTTCCTTCAATTTCAACCCCATCACTAACCAACAACCAAAATGTCAAGACTAGTCAAAATTCACCTTTCCCTTCTTCACAAAATCAAAATTCTCCACCCTTAGATGCTAATAATACATTCAGCATTAGTGAAAAAAGCATTATTAGTTTTGACCAAACTCATCATGGGTTGTATAGTCCACAAGTCATGGATGTTGTGTCACAAATTGGTGCAAATTCAAGGATTCCCAACTACAACAACAATAATAATCCTGTGGTGTCATTGTCTCAAGAAGGTTCAAGCAGCATTTCGGATTCCTCTTCAATTGCAATGAACAACAAGAATGTGTCACAGCCAGAACAACATGCTAATGATGATTATGAATCTATGGAAATGTTGATGGATTTTGGCTTTGGATTTCCCTATGATTTTGCCAATGGTCCTAACTGCCATTATGAGAGAGTTGGTGAATTGGCTCCAAGTTCGTATCCAGAGTGGGTTGATTTTAGCTATGCTGACATTAAGCCACATTGACCGAATCAAAATGTTATATAGTTAGCTAGTTATACAATATTGTATAACCATGGGATTTTCTGTAAGAAAAAACAATGCCAAAACGTATGTGAAGGGAAGACTTAGCTGAGATTTAATTTTTCTAGTTTGTTGATCTAATATAGTATTAATTAGTAGTACTTGTGTGTTGTGTTCATAGATAGGAACTGCATAGTTTAATTAGGTCAAATTTTGAATTAAGCAAATAAAAACGATTAAAGATTATTGATAAGATGCCCTTGTGTCTTTGTTAATTAATTAAGGTTCATATATGCATGGTA >Glyma14g10483.3 sequence type=transcript gene model=Glyma14g10483 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTCAATTATTCAACTATTAGCTTTGATTTTTTCTTTCTCTCTCTTTTTTTTTCTCTTATCAAAATATCACGTCATGGTAGTATATATTATTATGCAGGCCTTAGACGGTGTGGCAAGAGTTGCCGGCTACGGTGGCTCAATTATCTGAGGCCAGACATCAAACATGGAGGCTTTACTGAAGAAGAGGACAACATCATTTGTACCCTCTATGCTGAGATGGGAAGCAGATGGTCTGCCATAGCCTCTAAACTTCCTGGCAGAACCGACAATGATGTGAAAAACTACTGGAACACGAAACTGAAGAAGAAGATCATGGCAGGGAAAGTTACCCTCAAAACATTGACTGACAATGACACGCTTCCTTCAATTTCAACCCCATCACTAACCAACAACCAAAATGTCAAGACTAGTCAAAATTCACCTTTCCCTTCTTCACAAAATCAAAATTCTCCACCCTTAGATGCTAATAATACATTCAGCATTAGTGAAAAAAGCATTATTAGTTTTGACCAAACTCATCATGGGTTGTATAGTCCACAAGTCATGGATGTTGTGTCACAAATTGGTGCAAATTCAAGGATTCCCAACTACAACAACAATAATAATCCTGTGGTGTCATTGTCTCAAGAAGGTTCAAGCAGCATTTCGGATTCCTCTTCAATTGCAATGAACAACAAGAATGTGTCACAGCCAGAACAACATGCTAATGATGATTATGAATCTATGGAAATGTTGATGGATTTTGGCTTTGGATTTCCCTATGATTTTGCCAATGGTCCTAACTGCCATTATGAGAGAGTTGGTGAATTGGCTCCAAGTTCGTATCCAGAGTGGGTTGATTTTAGCTATGCTGACATTAAGCCACATTGACCGAATCAAAATGTTATATAGTTAGCTAGTTATACAATATTGTATAACCATGGGATTTTCTGTAAGAAAAAACAATGCCAAAACGTATGTGAAGGGAAGACTTAGCTGAGATTTAATTTTTCTAGTTTGTTGATCTAATATAGTATTAATTAGTAGTACTTGTGTGTTGTGTTCATAGATAGGAACTGCATAGTTTAATTAGGTCAAATTTTGAATTAAGCAAATAAAAACGATTAAAGATTATTGATAAGATGCCCTTGTGTCTTTGTTAATTAATTAAGGTTCATATATGCATGGTA
>Glyma14g10483.1 sequence type=CDS gene model=Glyma14g10483 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAAGAGCTCCTTGTTGTGACAAAGCAAACGTTAAGAGAGGGCCATGGTCTCCAGAAGAAGATGCTACACTCAAAAATTATGTAGAGACTCATGGCACTGGTGGAAATTGGATTGCATTGCCCAAAAAAGCTGGCCTTAGACGGTGTGGCAAGAGTTGCCGGCTACGGTGGCTCAATTATCTGAGGCCAGACATCAAACATGGAGGCTTTACTGAAGAAGAGGACAACATCATTTGTACCCTCTATGCTGAGATGGGAAGCAGATGGTCTGCCATAGCCTCTAAACTTCCTGGCAGAACCGACAATGATGTGAAAAACTACTGGAACACGAAACTGAAGAAGAAGATCATGGCAGGGAAAGTTACCCTCAAAACATTGACTGACAATGACACGCTTCCTTCAATTTCAACCCCATCACTAACCAACAACCAAAATGTCAAGACTAGTCAAAATTCACCTTTCCCTTCTTCACAAAATCAAAATTCTCCACCCTTAGATGCTAATAATACATTCAGCATTAGTGAAAAAAGCATTATTAGTTTTGACCAAACTCATCATGGGTTGTATAGTCCACAAGTCATGGATGTTGTGTCACAAATTGGTGCAAATTCAAGGATTCCCAACTACAACAACAATAATAATCCTGTGGTGTCATTGTCTCAAGAAGGTTCAAGCAGCATTTCGGATTCCTCTTCAATTGCAATGAACAACAAGAATGTGTCACAGCCAGAACAACATGCTAATGATGATTATGAATCTATGGAAATGTTGATGGATTTTGGCTTTGGATTTCCCTATGATTTTGCCAATGGTCCTAACTGCCATTATGAGAGAGTTGGTGAATTGGCTCCAAGTTCGTATCCAGAGTGGGTTGATTTTAGCTATGCTGACATTAAGCCACATTGA >Glyma14g10483.2 sequence type=CDS gene model=Glyma14g10483 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCCACTAGTCCACTAGTAGACACCATTTTTCCGCATATGCCAGGCGTTATTTTTGAATCCGGGGTCAAAATTCATAAATACCTTGTGAAGCTTTCAAGACATGAAACAAGGAGCCTTAGACGGTGTGGCAAGAGTTGCCGGCTACGGTGGCTCAATTATCTGAGGCCAGACATCAAACATGGAGGCTTTACTGAAGAAGAGGACAACATCATTTGTACCCTCTATGCTGAGATGGGAAGCAGATGGTCTGCCATAGCCTCTAAACTTCCTGGCAGAACCGACAATGATGTGAAAAACTACTGGAACACGAAACTGAAGAAGAAGATCATGGCAGGGAAAGTTACCCTCAAAACATTGACTGACAATGACACGCTTCCTTCAATTTCAACCCCATCACTAACCAACAACCAAAATGTCAAGACTAGTCAAAATTCACCTTTCCCTTCTTCACAAAATCAAAATTCTCCACCCTTAGATGCTAATAATACATTCAGCATTAGTGAAAAAAGCATTATTAGTTTTGACCAAACTCATCATGGGTTGTATAGTCCACAAGTCATGGATGTTGTGTCACAAATTGGTGCAAATTCAAGGATTCCCAACTACAACAACAATAATAATCCTGTGGTGTCATTGTCTCAAGAAGGTTCAAGCAGCATTTCGGATTCCTCTTCAATTGCAATGAACAACAAGAATGTGTCACAGCCAGAACAACATGCTAATGATGATTATGAATCTATGGAAATGTTGATGGATTTTGGCTTTGGATTTCCCTATGATTTTGCCAATGGTCCTAACTGCCATTATGAGAGAGTTGGTGAATTGGCTCCAAGTTCGTATCCAGAGTGGGTTGATTTTAGCTATGCTGACATTAAGCCACATTGA >Glyma14g10483.3 sequence type=CDS gene model=Glyma14g10483 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAAGCAGATGGTCTGCCATAGCCTCTAAACTTCCTGGCAGAACCGACAATGATGTGAAAAACTACTGGAACACGAAACTGAAGAAGAAGATCATGGCAGGGAAAGTTACCCTCAAAACATTGACTGACAATGACACGCTTCCTTCAATTTCAACCCCATCACTAACCAACAACCAAAATGTCAAGACTAGTCAAAATTCACCTTTCCCTTCTTCACAAAATCAAAATTCTCCACCCTTAGATGCTAATAATACATTCAGCATTAGTGAAAAAAGCATTATTAGTTTTGACCAAACTCATCATGGGTTGTATAGTCCACAAGTCATGGATGTTGTGTCACAAATTGGTGCAAATTCAAGGATTCCCAACTACAACAACAATAATAATCCTGTGGTGTCATTGTCTCAAGAAGGTTCAAGCAGCATTTCGGATTCCTCTTCAATTGCAATGAACAACAAGAATGTGTCACAGCCAGAACAACATGCTAATGATGATTATGAATCTATGGAAATGTTGATGGATTTTGGCTTTGGATTTCCCTATGATTTTGCCAATGGTCCTAACTGCCATTATGAGAGAGTTGGTGAATTGGCTCCAAGTTCGTATCCAGAGTGGGTTGATTTTAGCTATGCTGACATTAAGCCACATTGA
>Glyma14g10483.1 sequence type=predicted peptide gene model=Glyma14g10483 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGRAPCCDKANVKRGPWSPEEDATLKNYVETHGTGGNWIALPKKAGLRRCGKSCRLRWLNYLRPDIKHGGFTEEEDNIICTLYAEMGSRWSAIASKLPGRTDNDVKNYWNTKLKKKIMAGKVTLKTLTDNDTLPSISTPSLTNNQNVKTSQNSPFPSSQNQNSPPLDANNTFSISEKSIISFDQTHHGLYSPQVMDVVSQIGANSRIPNYNNNNNPVVSLSQEGSSSISDSSSIAMNNKNVSQPEQHANDDYESMEMLMDFGFGFPYDFANGPNCHYERVGELAPSSYPEWVDFSYADIKPH* >Glyma14g10483.2 sequence type=predicted peptide gene model=Glyma14g10483 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPTSPLVDTIFPHMPGVIFESGVKIHKYLVKLSRHETRSLRRCGKSCRLRWLNYLRPDIKHGGFTEEEDNIICTLYAEMGSRWSAIASKLPGRTDNDVKNYWNTKLKKKIMAGKVTLKTLTDNDTLPSISTPSLTNNQNVKTSQNSPFPSSQNQNSPPLDANNTFSISEKSIISFDQTHHGLYSPQVMDVVSQIGANSRIPNYNNNNNPVVSLSQEGSSSISDSSSIAMNNKNVSQPEQHANDDYESMEMLMDFGFGFPYDFANGPNCHYERVGELAPSSYPEWVDFSYADIKPH* >Glyma14g10483.3 sequence type=predicted peptide gene model=Glyma14g10483 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSRWSAIASKLPGRTDNDVKNYWNTKLKKKIMAGKVTLKTLTDNDTLPSISTPSLTNNQNVKTSQNSPFPSSQNQNSPPLDANNTFSISEKSIISFDQTHHGLYSPQVMDVVSQIGANSRIPNYNNNNNPVVSLSQEGSSSISDSSSIAMNNKNVSQPEQHANDDYESMEMLMDFGFGFPYDFANGPNCHYERVGELAPSSYPEWVDFSYADIKPH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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