Glyma14g10330 - SoyBase

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Report for Sequence Feature Glyma14g10330

Feature Type:	gene_model
Chromosome:	Gm14
Start:	8496619
stop:	8499241
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g10330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G49510	AT	Annotation by Michelle Graham. TAIR10: embryo defective 1273 \| chr1:18327026-18328147 FORWARD LENGTH=240	SoyBase	E_val: 1.00E-18	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_D7KEY0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: EMB1273 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KEY0_ARALL	SoyBase	E_val: 3.00E-17	ISS
UniRef100_I1M8X7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M8X7_SOYBN	SoyBase	E_val: 4.00E-167	ISS

Expression Patterns of Glyma14g10330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g10330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g090800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g10330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g10330

Limit To All Plant Sequences

>Glyma14g10330.2   sequence type=transcript   gene model=Glyma14g10330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCCTCTTTGGTTTACGACGTTGAAGGTTGGCCTAATTGGGTCAGTCCCAAACCTGTCTGAACGCAAAACCCTAGCGCTTGATGTAATATTGCATCGCATTGCACTGAATTGGATTGGGTTGCAGCTGAAGCAACGAAGGATATGGCGATTCTTCCTTCTCTTGCAGTTCCTTCAACTCCCATTTCTCGGCTGTTTCAGTGCCAACCCTGTCAATTCCATAGATGCACAGAACTATATCTTCCCCATCAAACATATTATACTCGAACTAGATCAATTAAAGTATCAATGGCAGACCATAATGAGCCGAGTGAGGTTAAGATGCAGATTGGGATCATGAGGGAGAAACTTAAAGAAGCAATGCCAGTCTCAGTTCAAGAATTTCCTTGGAAAAAAGCTGAGCAAATACTCCTAGACAGACTACTTAATCTTGCACAAGAGACAGTGAAGTGGTCTCTTGTTTTGTTTTTCATCTTTAGCTCTGTATCGGATGTTGTATATACATTCTCCATAAACCGTGAATTGGTTATTCCCATTGGCCTCTTTGTTGGCCTTCTTGTGGCTGGTTTCTTGAAAGAGATATCGCAAGACTTGTTTCATAGACCCGAGGAAAAGGATTTGAAATGGCATCTTCTGGGCATGTATTGCATTTTTGTGTTTGCCAAGTTTATGTCAACATGGTTTGCAACACTACCTCGAGTGTTTCTTTTGCATGTTGCAAATGGGGGACTGATACAGGCTTTGTGGCATTCGACAAATTTTATGGAAGATGAAAAGAACAAACAAGAAACTAGCAGTTCCTCTAGTTTGCATGCTTCATGATGGATGTATAAGTTAAGTATTCCAGCACATCTTTATGAGCAGATTGGGTTGTAATTTTCCATTAATATGTGGCCAATATGAGGTTTTTTTACTGGAGTGCACCTTCTCTCTCATTTATATATCCATTCTACATTAGTTTAAGAAAATATTTTCAAACTACACCATTTTTTTGTGCTTTACAGGAGTTGGGTTTTGCCACCCCGACTTCCCTTCTTCATCTTTCTTTTTATATATAAATT

Coding sequences of Glyma14g10330

Limit To All Plant Sequences

>Glyma14g10330.1   sequence type=CDS   gene model=Glyma14g10330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGATTCTTCCTTCTCTTGCAGTTCCTTCAACTCCCATTTCTCGGGTAAAGCTGTTTCAGTGCCAACCCTGTCAATTCCATAGATGCACAGAACTATATCTTCCCCATCAAACATATTATACTCGAACTAGATCAATTAAAGTATCAATGGCAGACCATAATGAGCCGAGTGAGGTTAAGATGCAGATTGGGATCATGAGGGAGAAACTTAAAGAAGCAATGCCAGTCTCAGTTCAAGAATTTCCTTGGAAAAAAGCTGAGCAAATACTCCTAGACAGACTACTTAATCTTGCACAAGAGACAGTGAAGTGGTCTCTTGTTTTGTTTTTCATCTTTAGCTCTGTATCGGATGTTGTATATACATTCTCCATAAACCGTGAATTGGTTATTCCCATTGGCCTCTTTGTTGGCCTTCTTGTGGCTGGTTTCTTGAAAGAGATATCGCAAGACTTGTTTCATAGACCCGAGGAAAAGGATTTGAAATGGCATCTTCTGGGCATGTATTGCATTTTTGTGTTTGCCAAGTTTATGTCAACATGGTTTGCAACACTACCTCGAGTGTTTCTTTTGCATGTTGCAAATGGGGGACTGATACAGGCTTTGTGGCATTCGACAAATTTTATGGAAGATGAAAAGAACAAACAAGAAACTAGCAGTTCCTCTAGTTTGCATGCTTCATGA

>Glyma14g10330.2   sequence type=CDS   gene model=Glyma14g10330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGATTCTTCCTTCTCTTGCAGTTCCTTCAACTCCCATTTCTCGGCTGTTTCAGTGCCAACCCTGTCAATTCCATAGATGCACAGAACTATATCTTCCCCATCAAACATATTATACTCGAACTAGATCAATTAAAGTATCAATGGCAGACCATAATGAGCCGAGTGAGGTTAAGATGCAGATTGGGATCATGAGGGAGAAACTTAAAGAAGCAATGCCAGTCTCAGTTCAAGAATTTCCTTGGAAAAAAGCTGAGCAAATACTCCTAGACAGACTACTTAATCTTGCACAAGAGACAGTGAAGTGGTCTCTTGTTTTGTTTTTCATCTTTAGCTCTGTATCGGATGTTGTATATACATTCTCCATAAACCGTGAATTGGTTATTCCCATTGGCCTCTTTGTTGGCCTTCTTGTGGCTGGTTTCTTGAAAGAGATATCGCAAGACTTGTTTCATAGACCCGAGGAAAAGGATTTGAAATGGCATCTTCTGGGCATGTATTGCATTTTTGTGTTTGCCAAGTTTATGTCAACATGGTTTGCAACACTACCTCGAGTGTTTCTTTTGCATGTTGCAAATGGGGGACTGATACAGGCTTTGTGGCATTCGACAAATTTTATGGAAGATGAAAAGAACAAACAAGAAACTAGCAGTTCCTCTAGTTTGCATGCTTCATGA

Predicted protein sequences of Glyma14g10330

Limit To All Plant Sequences

>Glyma14g10330.1   sequence type=predicted peptide   gene model=Glyma14g10330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAILPSLAVPSTPISRVKLFQCQPCQFHRCTELYLPHQTYYTRTRSIKVSMADHNEPSEVKMQIGIMREKLKEAMPVSVQEFPWKKAEQILLDRLLNLAQETVKWSLVLFFIFSSVSDVVYTFSINRELVIPIGLFVGLLVAGFLKEISQDLFHRPEEKDLKWHLLGMYCIFVFAKFMSTWFATLPRVFLLHVANGGLIQALWHSTNFMEDEKNKQETSSSSSLHAS*

>Glyma14g10330.2   sequence type=predicted peptide   gene model=Glyma14g10330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAILPSLAVPSTPISRLFQCQPCQFHRCTELYLPHQTYYTRTRSIKVSMADHNEPSEVKMQIGIMREKLKEAMPVSVQEFPWKKAEQILLDRLLNLAQETVKWSLVLFFIFSSVSDVVYTFSINRELVIPIGLFVGLLVAGFLKEISQDLFHRPEEKDLKWHLLGMYCIFVFAKFMSTWFATLPRVFLLHVANGGLIQALWHSTNFMEDEKNKQETSSSSSLHAS*

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