Glyma14g10100 - SoyBase

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Report for Sequence Feature Glyma14g10100

Feature Type:	gene_model
Chromosome:	Gm14
Start:	8199978
stop:	8204920
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g10100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G22840	AT	Annotation by Michelle Graham. TAIR10: growth-regulating factor 1 \| chr2:9728841-9731141 FORWARD LENGTH=530	SoyBase	E_val: 4.00E-97	ISS
GO:0009624	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nematode	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009845	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed germination	SoyBase	N/A	ISS
GO:0010162	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed dormancy process	SoyBase	N/A	ISS
GO:0048364	GO-bp	Annotation by Michelle Graham. GO Biological Process: root development	SoyBase	N/A	ISS
GO:0048366	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf development	SoyBase	N/A	ISS
GO:0061062	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of nematode larval development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016818	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	SoyBase	N/A	ISS
PF08879	PFAM	WRC	JGI		ISS
PF08880	PFAM	QLQ	JGI		ISS
UniRef100_D9ZIZ8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GRF domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZIZ8_MALDO	SoyBase	E_val: 7.00E-147	ISS
UniRef100_UPI000233E4E0	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E4E0 related cluster n=1 Tax=unknown RepID=UPI000233E4E0	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g10100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g10100

Paralog	Evidence	Comments
Glyma17g35090	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g10100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.U028600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g10100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g10100

Limit To All Plant Sequences

>Glyma14g10100.3   sequence type=transcript   gene model=Glyma14g10100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGCCAAAATATTATGTGGGTTGTTACTGTCTGATTCTACAGTGCCGGTGGAAGGTCTTTTCGTGGAAATAAAATACATGAGTAGTCTCTGTTTGTGAGTCATGTCACGGGAAAGCAACGCAAAGCCAAAAAATTCTTCCTAAAATGTAAAAAATCTTCCCTTCTTCTTCCCCTTTTAGGAAGAGGGATTTTGATAAAAAAAAATTGCACAGTAAACTAGAGTATACCAAATGAGACAAATATATGAAGAGCTGTTACCATGAAAAAAAATGTTCCAAATTTTTTATTGGTTACAGTTCAGGAAGCATAAGCATGCATGGGGCTTTGGCTGGTGTGAGAGGGCCATTCACTCCGTCACAGTGGATGGAGCTTGAACACCAAGCCTTGATCTACAAATACATCACTTCAAACGTGCCTGTGCCAACCCATCTCATACCCATTAGAAAAGCACTTGATTCTTTGGGCTTCTGCAACTTTTCAACTGGACTCCTAAGGCCCAACGCATTGGGATGGGGAGGTTTCCATCTGGGATTCTCGAACAACACAGACCCTGAGCCAGGCAGGTGTAGGAGAACAGATGGAAAAAAATGGCGATGCTCGAGAGATGCCGTAGTGGATCAAAAGTATTGCGAGCGGCACATGAATAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATTAGGCCATGCCCTCACCACCACCACCACCACCAATACACCTAATGCTTCCTCCAACTCTACCGTGGTGCCCCGCAACACCACCACCACCACCACCTTTGCACACAACAATGTGCACCACCCTCTTCCACCTCATTCGTCTCAGGCCAACACCATCAATAGGATGTTTACAAGCAACAAAGAGAATAACAGTACCAGTGAGAGGCTGCAGGACCCTGCTCTTCCCATGCTGCCTCCCACTCTTGAGCTGAAACCAAAGGAGAACAATCCTTTCATGATTCATAAACACCACATCCCAGCTGATGAATACTCAAGGAACAGCAATGAGTTTGGACTCGTCACTTCTGATTCCTTGCTTAACCCTACACAGAAAAGAAGCTTTACTTCTTCACAAAAGGATGATTCTGAGTCCCAACAACAACATTCCCTCAGGCACTTCATTGATGACTCTCCCAAACCACAGTCTCATAATCATCACCACCATCATCATTCGTCGTCTATTTGGCCCGAACTGGACAGCATGCAATCAGACAGGACTCAGTTATCAATCTCCATACCGATATCTTCCTCAGATTTTATGTCATTCACTACTTCCTCACCCTCCAACGAGAAACTCACGTTGTCACCATTGGGGCATTCGAGGGAGTTAGACCCCATTCAAATGGAGTTGGGAATGGGAAGTGGTGCCTCCAATGAAGCAAACACCAGGCAAGCCAATTGGATTCCAATCACTTGGGAGAGTTCAATGGGTGGTCCTCTTGGAGAGGTATTGAACCTTAGCAATAACAGCAATGCAAGTGATCAATGTGGCAAGAACAACAACACTTCAGCTCTCAACCTCATGAAAGATGGGTGGGACAATAATCCTCCACTAGGGTCATCCCCAACTGGGGTGCTTCAAAAATCAGCATTTGGATCACTTTCCAATAGCAGTGCTGGGAGCAGTCCAAGGGCAGAAAACAACAAAGAAGGTGCCACCTTGTGCAATGCCTTGTAAAGTACTTCATACAAGAAGAAGCCCTTGCCCTTGAACTATGGTGAAGCCATGATGGAGGAAGAAGAAGAAAAGGACTTTGTTCTTTTTACTTCAATTATTAGTGAAGTTTATATATATAATATATATGGTAATGCTAGAGTTTGGAAATATGTGTTCATGTTCATGCTAATTACCCTTGCCTAAATAATTTGGATGTGTAGGTAGGTTTTTTGGTTTGGTTGACTTTTACTTTGTTTCTTTCTATTCATGCGTTTTTGGCAAAGTTTGTATTCAACAGTAAGTGAACGATGTTGGTTGGAGTGTGTGGACTTGGTTGTTTGTTAAGGAGATGATGATGGTCAGGTTTTGGGGTCCAAGTGTGGTGACCATGATTTTTCATGACCATAATAAATTTATGTGACTAATTCGTGGGACTCAGGCACGCACGTAGGAAAAAGTTAATGCAAGCAACACAAGTTTTGTCGAAGTCTTATATGGAATAGAGATTTCGCATTTCTTGTTTTGAAGTTTGAACTTGCCCTTTGTTCTTCTTCTTCCTCCTCGTTGGAAATTTGTTTGGAAATGAATTGGGGTTTGTGGAATGTGGA

Coding sequences of Glyma14g10100

Limit To All Plant Sequences

>Glyma14g10100.2   sequence type=CDS   gene model=Glyma14g10100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCTTGGGGTGGTGGGTTTGGAGGGGGTGGTGGGTTCAGAAAGTTGTTGTGTGTTTGGTTCCTCTCTTGCTTCAGATCCTGAGACAAAGCACAAATGGTACGGATCTGGTGTGCTCAAGCAAGAGAGATCTGCCATAGCAAGTGAAGATGATGAGTGGAGAACTTCTAAAGTGGCCAAAACTGATCATGACATGTCTTCTGCCTCCAAAGCAATGCTCTTTCAGCAAAGAAACAACTCTTTGTTGAGATCTAATGCTACCCTTTTCTCTGATGGCCATCATCACCAATCACAAATGTTGAGCTTCTCTTCTCCAAAGTCAGAGTCTTTGTTGGTAGATAAGGCTTCCTCAAATGCCACATTGCCTTTTTCTTACCACCAATTGTCTAGCAACACCAGAAATGCAGGTTACAGTTCAGGAAGCATAAGCATGCATGGGGCTTTGGCTGGTGTGAGAGGGCCATTCACTCCGTCACAGTGGATGGAGCTTGAACACCAAGCCTTGATCTACAAATACATCACTTCAAACGTGCCTGTGCCAACCCATCTCATACCCATTAGAAAAGCACTTGATTCTTTGGGCTTCTGCAACTTTTCAACTGGACTCCTAAGGCCCAACGCATTGGGATGGGGAGGTTTCCATCTGGGATTCTCGAACAACACAGACCCTGAGCCAGGCAGGTGTAGGAGAACAGATGGAAAAAAATGGCGATGCTCGAGAGATGCCGTAGTGGATCAAAAGTATTGCGAGCGGCACATGAATAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATTAGGCCATGCCCTCACCACCACCACCACCACCAATACACCTAATGCTTCCTCCAACTCTACCGTGGTGCCCCGCAACACCACCACCACCACCACCTTTGCACACAACAATGTGCACCACCCTCTTCCACCTCATTCGTCTCAGGCCAACACCATCAATAGGATGTTTACAAGCAACAAAGAGAATAACAGTACCAGTGAGAGGCTGCAGGACCCTGCTCTTCCCATGCTGCCTCCCACTCTTGAGCTGAAACCAAAGGAGAACAATCCTTTCATGATTCATAAACACCACATCCCAGCTGATGAATACTCAAGGAACAGCAATGAGTTTGGACTCGTCACTTCTGATTCCTTGCTTAACCCTACACAGAAAAGAAGCTTTACTTCTTCACAAAAGGATGATTCTGAGTCCCAACAACAACATTCCCTCAGGCACTTCATTGATGACTCTCCCAAACCACAGTCTCATAATCATCACCACCATCATCATTCGTCGTCTATTTGGCCCGAACTGGACAGCATGCAATCAGACAGGACTCAGTTATCAATCTCCATACCGATATCTTCCTCAGATTTTATGTCATTCACTACTTCCTCACCCTCCAACGAGAAACTCACGTTGTCACCATTGGGGCATTCGAGGGAGTTAGACCCCATTCAAATGGAGTTGGGAATGGGAAGTGGTGCCTCCAATGAAGCAAACACCAGGCAAGCCAATTGGATTCCAATCACTTGGGAGAGTTCAATGGGTGGTCCTCTTGGAGAGGTATTGAACCTTAGCAATAACAGCAATGCAAGTGATCAATGTGGCAAGAACAACAACACTTCAGCTCTCAACCTCATGAAAGATGGGTGGGACAATAATCCTCCACTAGGGTCATCCCCAACTGGGGTGCTTCAAAAATCAGCATTTGGATCACTTTCCAATAGCAGTGCTGGGAGCAGTCCAAGGGCAGAAAACAACAAAGAAGGTGCCACCTTGTGCAATGCCTTGTAA

>Glyma14g10100.3   sequence type=CDS   gene model=Glyma14g10100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAGCTGTTACCATGAAAAAAAATGTTCCAAATTTTTTATTGGTTACAGTTCAGGAAGCATAAGCATGCATGGGGCTTTGGCTGGTGTGAGAGGGCCATTCACTCCGTCACAGTGGATGGAGCTTGAACACCAAGCCTTGATCTACAAATACATCACTTCAAACGTGCCTGTGCCAACCCATCTCATACCCATTAGAAAAGCACTTGATTCTTTGGGCTTCTGCAACTTTTCAACTGGACTCCTAAGGCCCAACGCATTGGGATGGGGAGGTTTCCATCTGGGATTCTCGAACAACACAGACCCTGAGCCAGGCAGGTGTAGGAGAACAGATGGAAAAAAATGGCGATGCTCGAGAGATGCCGTAGTGGATCAAAAGTATTGCGAGCGGCACATGAATAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATTAGGCCATGCCCTCACCACCACCACCACCACCAATACACCTAATGCTTCCTCCAACTCTACCGTGGTGCCCCGCAACACCACCACCACCACCACCTTTGCACACAACAATGTGCACCACCCTCTTCCACCTCATTCGTCTCAGGCCAACACCATCAATAGGATGTTTACAAGCAACAAAGAGAATAACAGTACCAGTGAGAGGCTGCAGGACCCTGCTCTTCCCATGCTGCCTCCCACTCTTGAGCTGAAACCAAAGGAGAACAATCCTTTCATGATTCATAAACACCACATCCCAGCTGATGAATACTCAAGGAACAGCAATGAGTTTGGACTCGTCACTTCTGATTCCTTGCTTAACCCTACACAGAAAAGAAGCTTTACTTCTTCACAAAAGGATGATTCTGAGTCCCAACAACAACATTCCCTCAGGCACTTCATTGATGACTCTCCCAAACCACAGTCTCATAATCATCACCACCATCATCATTCGTCGTCTATTTGGCCCGAACTGGACAGCATGCAATCAGACAGGACTCAGTTATCAATCTCCATACCGATATCTTCCTCAGATTTTATGTCATTCACTACTTCCTCACCCTCCAACGAGAAACTCACGTTGTCACCATTGGGGCATTCGAGGGAGTTAGACCCCATTCAAATGGAGTTGGGAATGGGAAGTGGTGCCTCCAATGAAGCAAACACCAGGCAAGCCAATTGGATTCCAATCACTTGGGAGAGTTCAATGGGTGGTCCTCTTGGAGAGGTATTGAACCTTAGCAATAACAGCAATGCAAGTGATCAATGTGGCAAGAACAACAACACTTCAGCTCTCAACCTCATGAAAGATGGGTGGGACAATAATCCTCCACTAGGGTCATCCCCAACTGGGGTGCTTCAAAAATCAGCATTTGGATCACTTTCCAATAGCAGTGCTGGGAGCAGTCCAAGGGCAGAAAACAACAAAGAAGGTGCCACCTTGTGCAATGCCTTGTAA

Predicted protein sequences of Glyma14g10100

Limit To All Plant Sequences

>Glyma14g10100.2   sequence type=predicted peptide   gene model=Glyma14g10100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLGVVGLEGVVGSESCCVFGSSLASDPETKHKWYGSGVLKQERSAIASEDDEWRTSKVAKTDHDMSSASKAMLFQQRNNSLLRSNATLFSDGHHHQSQMLSFSSPKSESLLVDKASSNATLPFSYHQLSSNTRNAGYSSGSISMHGALAGVRGPFTPSQWMELEHQALIYKYITSNVPVPTHLIPIRKALDSLGFCNFSTGLLRPNALGWGGFHLGFSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQLGHALTTTTTTNTPNASSNSTVVPRNTTTTTTFAHNNVHHPLPPHSSQANTINRMFTSNKENNSTSERLQDPALPMLPPTLELKPKENNPFMIHKHHIPADEYSRNSNEFGLVTSDSLLNPTQKRSFTSSQKDDSESQQQHSLRHFIDDSPKPQSHNHHHHHHSSSIWPELDSMQSDRTQLSISIPISSSDFMSFTTSSPSNEKLTLSPLGHSRELDPIQMELGMGSGASNEANTRQANWIPITWESSMGGPLGEVLNLSNNSNASDQCGKNNNTSALNLMKDGWDNNPPLGSSPTGVLQKSAFGSLSNSSAGSSPRAENNKEGATLCNAL*

>Glyma14g10100.3   sequence type=predicted peptide   gene model=Glyma14g10100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSCYHEKKCSKFFIGYSSGSISMHGALAGVRGPFTPSQWMELEHQALIYKYITSNVPVPTHLIPIRKALDSLGFCNFSTGLLRPNALGWGGFHLGFSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQLGHALTTTTTTNTPNASSNSTVVPRNTTTTTTFAHNNVHHPLPPHSSQANTINRMFTSNKENNSTSERLQDPALPMLPPTLELKPKENNPFMIHKHHIPADEYSRNSNEFGLVTSDSLLNPTQKRSFTSSQKDDSESQQQHSLRHFIDDSPKPQSHNHHHHHHSSSIWPELDSMQSDRTQLSISIPISSSDFMSFTTSSPSNEKLTLSPLGHSRELDPIQMELGMGSGASNEANTRQANWIPITWESSMGGPLGEVLNLSNNSNASDQCGKNNNTSALNLMKDGWDNNPPLGSSPTGVLQKSAFGSLSNSSAGSSPRAENNKEGATLCNAL*

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