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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G22840 | AT | Annotation by Michelle Graham. TAIR10: growth-regulating factor 1 | chr2:9728841-9731141 FORWARD LENGTH=530 | SoyBase | E_val: 4.00E-97 | ISS |
| GO:0009624 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to nematode | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0010162 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed dormancy process | SoyBase | N/A | ISS |
| GO:0048364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root development | SoyBase | N/A | ISS |
| GO:0048366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf development | SoyBase | N/A | ISS |
| GO:0061062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of nematode larval development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016818 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | SoyBase | N/A | ISS |
| PF08879 | PFAM | WRC | JGI | ISS | |
| PF08880 | PFAM | QLQ | JGI | ISS | |
| UniRef100_D9ZIZ8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GRF domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZIZ8_MALDO | SoyBase | E_val: 7.00E-147 | ISS |
| UniRef100_UPI000233E4E0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E4E0 related cluster n=1 Tax=unknown RepID=UPI000233E4E0 | SoyBase | E_val: 0 | ISS |
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Glyma14g10100 not represented in the dataset |
Glyma14g10100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g35090 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.U028600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g10100.3 sequence type=transcript gene model=Glyma14g10100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAGCCAAAATATTATGTGGGTTGTTACTGTCTGATTCTACAGTGCCGGTGGAAGGTCTTTTCGTGGAAATAAAATACATGAGTAGTCTCTGTTTGTGAGTCATGTCACGGGAAAGCAACGCAAAGCCAAAAAATTCTTCCTAAAATGTAAAAAATCTTCCCTTCTTCTTCCCCTTTTAGGAAGAGGGATTTTGATAAAAAAAAATTGCACAGTAAACTAGAGTATACCAAATGAGACAAATATATGAAGAGCTGTTACCATGAAAAAAAATGTTCCAAATTTTTTATTGGTTACAGTTCAGGAAGCATAAGCATGCATGGGGCTTTGGCTGGTGTGAGAGGGCCATTCACTCCGTCACAGTGGATGGAGCTTGAACACCAAGCCTTGATCTACAAATACATCACTTCAAACGTGCCTGTGCCAACCCATCTCATACCCATTAGAAAAGCACTTGATTCTTTGGGCTTCTGCAACTTTTCAACTGGACTCCTAAGGCCCAACGCATTGGGATGGGGAGGTTTCCATCTGGGATTCTCGAACAACACAGACCCTGAGCCAGGCAGGTGTAGGAGAACAGATGGAAAAAAATGGCGATGCTCGAGAGATGCCGTAGTGGATCAAAAGTATTGCGAGCGGCACATGAATAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATTAGGCCATGCCCTCACCACCACCACCACCACCAATACACCTAATGCTTCCTCCAACTCTACCGTGGTGCCCCGCAACACCACCACCACCACCACCTTTGCACACAACAATGTGCACCACCCTCTTCCACCTCATTCGTCTCAGGCCAACACCATCAATAGGATGTTTACAAGCAACAAAGAGAATAACAGTACCAGTGAGAGGCTGCAGGACCCTGCTCTTCCCATGCTGCCTCCCACTCTTGAGCTGAAACCAAAGGAGAACAATCCTTTCATGATTCATAAACACCACATCCCAGCTGATGAATACTCAAGGAACAGCAATGAGTTTGGACTCGTCACTTCTGATTCCTTGCTTAACCCTACACAGAAAAGAAGCTTTACTTCTTCACAAAAGGATGATTCTGAGTCCCAACAACAACATTCCCTCAGGCACTTCATTGATGACTCTCCCAAACCACAGTCTCATAATCATCACCACCATCATCATTCGTCGTCTATTTGGCCCGAACTGGACAGCATGCAATCAGACAGGACTCAGTTATCAATCTCCATACCGATATCTTCCTCAGATTTTATGTCATTCACTACTTCCTCACCCTCCAACGAGAAACTCACGTTGTCACCATTGGGGCATTCGAGGGAGTTAGACCCCATTCAAATGGAGTTGGGAATGGGAAGTGGTGCCTCCAATGAAGCAAACACCAGGCAAGCCAATTGGATTCCAATCACTTGGGAGAGTTCAATGGGTGGTCCTCTTGGAGAGGTATTGAACCTTAGCAATAACAGCAATGCAAGTGATCAATGTGGCAAGAACAACAACACTTCAGCTCTCAACCTCATGAAAGATGGGTGGGACAATAATCCTCCACTAGGGTCATCCCCAACTGGGGTGCTTCAAAAATCAGCATTTGGATCACTTTCCAATAGCAGTGCTGGGAGCAGTCCAAGGGCAGAAAACAACAAAGAAGGTGCCACCTTGTGCAATGCCTTGTAAAGTACTTCATACAAGAAGAAGCCCTTGCCCTTGAACTATGGTGAAGCCATGATGGAGGAAGAAGAAGAAAAGGACTTTGTTCTTTTTACTTCAATTATTAGTGAAGTTTATATATATAATATATATGGTAATGCTAGAGTTTGGAAATATGTGTTCATGTTCATGCTAATTACCCTTGCCTAAATAATTTGGATGTGTAGGTAGGTTTTTTGGTTTGGTTGACTTTTACTTTGTTTCTTTCTATTCATGCGTTTTTGGCAAAGTTTGTATTCAACAGTAAGTGAACGATGTTGGTTGGAGTGTGTGGACTTGGTTGTTTGTTAAGGAGATGATGATGGTCAGGTTTTGGGGTCCAAGTGTGGTGACCATGATTTTTCATGACCATAATAAATTTATGTGACTAATTCGTGGGACTCAGGCACGCACGTAGGAAAAAGTTAATGCAAGCAACACAAGTTTTGTCGAAGTCTTATATGGAATAGAGATTTCGCATTTCTTGTTTTGAAGTTTGAACTTGCCCTTTGTTCTTCTTCTTCCTCCTCGTTGGAAATTTGTTTGGAAATGAATTGGGGTTTGTGGAATGTGGA
>Glyma14g10100.2 sequence type=CDS gene model=Glyma14g10100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCTTGGGGTGGTGGGTTTGGAGGGGGTGGTGGGTTCAGAAAGTTGTTGTGTGTTTGGTTCCTCTCTTGCTTCAGATCCTGAGACAAAGCACAAATGGTACGGATCTGGTGTGCTCAAGCAAGAGAGATCTGCCATAGCAAGTGAAGATGATGAGTGGAGAACTTCTAAAGTGGCCAAAACTGATCATGACATGTCTTCTGCCTCCAAAGCAATGCTCTTTCAGCAAAGAAACAACTCTTTGTTGAGATCTAATGCTACCCTTTTCTCTGATGGCCATCATCACCAATCACAAATGTTGAGCTTCTCTTCTCCAAAGTCAGAGTCTTTGTTGGTAGATAAGGCTTCCTCAAATGCCACATTGCCTTTTTCTTACCACCAATTGTCTAGCAACACCAGAAATGCAGGTTACAGTTCAGGAAGCATAAGCATGCATGGGGCTTTGGCTGGTGTGAGAGGGCCATTCACTCCGTCACAGTGGATGGAGCTTGAACACCAAGCCTTGATCTACAAATACATCACTTCAAACGTGCCTGTGCCAACCCATCTCATACCCATTAGAAAAGCACTTGATTCTTTGGGCTTCTGCAACTTTTCAACTGGACTCCTAAGGCCCAACGCATTGGGATGGGGAGGTTTCCATCTGGGATTCTCGAACAACACAGACCCTGAGCCAGGCAGGTGTAGGAGAACAGATGGAAAAAAATGGCGATGCTCGAGAGATGCCGTAGTGGATCAAAAGTATTGCGAGCGGCACATGAATAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATTAGGCCATGCCCTCACCACCACCACCACCACCAATACACCTAATGCTTCCTCCAACTCTACCGTGGTGCCCCGCAACACCACCACCACCACCACCTTTGCACACAACAATGTGCACCACCCTCTTCCACCTCATTCGTCTCAGGCCAACACCATCAATAGGATGTTTACAAGCAACAAAGAGAATAACAGTACCAGTGAGAGGCTGCAGGACCCTGCTCTTCCCATGCTGCCTCCCACTCTTGAGCTGAAACCAAAGGAGAACAATCCTTTCATGATTCATAAACACCACATCCCAGCTGATGAATACTCAAGGAACAGCAATGAGTTTGGACTCGTCACTTCTGATTCCTTGCTTAACCCTACACAGAAAAGAAGCTTTACTTCTTCACAAAAGGATGATTCTGAGTCCCAACAACAACATTCCCTCAGGCACTTCATTGATGACTCTCCCAAACCACAGTCTCATAATCATCACCACCATCATCATTCGTCGTCTATTTGGCCCGAACTGGACAGCATGCAATCAGACAGGACTCAGTTATCAATCTCCATACCGATATCTTCCTCAGATTTTATGTCATTCACTACTTCCTCACCCTCCAACGAGAAACTCACGTTGTCACCATTGGGGCATTCGAGGGAGTTAGACCCCATTCAAATGGAGTTGGGAATGGGAAGTGGTGCCTCCAATGAAGCAAACACCAGGCAAGCCAATTGGATTCCAATCACTTGGGAGAGTTCAATGGGTGGTCCTCTTGGAGAGGTATTGAACCTTAGCAATAACAGCAATGCAAGTGATCAATGTGGCAAGAACAACAACACTTCAGCTCTCAACCTCATGAAAGATGGGTGGGACAATAATCCTCCACTAGGGTCATCCCCAACTGGGGTGCTTCAAAAATCAGCATTTGGATCACTTTCCAATAGCAGTGCTGGGAGCAGTCCAAGGGCAGAAAACAACAAAGAAGGTGCCACCTTGTGCAATGCCTTGTAA >Glyma14g10100.3 sequence type=CDS gene model=Glyma14g10100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGAGCTGTTACCATGAAAAAAAATGTTCCAAATTTTTTATTGGTTACAGTTCAGGAAGCATAAGCATGCATGGGGCTTTGGCTGGTGTGAGAGGGCCATTCACTCCGTCACAGTGGATGGAGCTTGAACACCAAGCCTTGATCTACAAATACATCACTTCAAACGTGCCTGTGCCAACCCATCTCATACCCATTAGAAAAGCACTTGATTCTTTGGGCTTCTGCAACTTTTCAACTGGACTCCTAAGGCCCAACGCATTGGGATGGGGAGGTTTCCATCTGGGATTCTCGAACAACACAGACCCTGAGCCAGGCAGGTGTAGGAGAACAGATGGAAAAAAATGGCGATGCTCGAGAGATGCCGTAGTGGATCAAAAGTATTGCGAGCGGCACATGAATAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATTAGGCCATGCCCTCACCACCACCACCACCACCAATACACCTAATGCTTCCTCCAACTCTACCGTGGTGCCCCGCAACACCACCACCACCACCACCTTTGCACACAACAATGTGCACCACCCTCTTCCACCTCATTCGTCTCAGGCCAACACCATCAATAGGATGTTTACAAGCAACAAAGAGAATAACAGTACCAGTGAGAGGCTGCAGGACCCTGCTCTTCCCATGCTGCCTCCCACTCTTGAGCTGAAACCAAAGGAGAACAATCCTTTCATGATTCATAAACACCACATCCCAGCTGATGAATACTCAAGGAACAGCAATGAGTTTGGACTCGTCACTTCTGATTCCTTGCTTAACCCTACACAGAAAAGAAGCTTTACTTCTTCACAAAAGGATGATTCTGAGTCCCAACAACAACATTCCCTCAGGCACTTCATTGATGACTCTCCCAAACCACAGTCTCATAATCATCACCACCATCATCATTCGTCGTCTATTTGGCCCGAACTGGACAGCATGCAATCAGACAGGACTCAGTTATCAATCTCCATACCGATATCTTCCTCAGATTTTATGTCATTCACTACTTCCTCACCCTCCAACGAGAAACTCACGTTGTCACCATTGGGGCATTCGAGGGAGTTAGACCCCATTCAAATGGAGTTGGGAATGGGAAGTGGTGCCTCCAATGAAGCAAACACCAGGCAAGCCAATTGGATTCCAATCACTTGGGAGAGTTCAATGGGTGGTCCTCTTGGAGAGGTATTGAACCTTAGCAATAACAGCAATGCAAGTGATCAATGTGGCAAGAACAACAACACTTCAGCTCTCAACCTCATGAAAGATGGGTGGGACAATAATCCTCCACTAGGGTCATCCCCAACTGGGGTGCTTCAAAAATCAGCATTTGGATCACTTTCCAATAGCAGTGCTGGGAGCAGTCCAAGGGCAGAAAACAACAAAGAAGGTGCCACCTTGTGCAATGCCTTGTAA
>Glyma14g10100.2 sequence type=predicted peptide gene model=Glyma14g10100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDLGVVGLEGVVGSESCCVFGSSLASDPETKHKWYGSGVLKQERSAIASEDDEWRTSKVAKTDHDMSSASKAMLFQQRNNSLLRSNATLFSDGHHHQSQMLSFSSPKSESLLVDKASSNATLPFSYHQLSSNTRNAGYSSGSISMHGALAGVRGPFTPSQWMELEHQALIYKYITSNVPVPTHLIPIRKALDSLGFCNFSTGLLRPNALGWGGFHLGFSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQLGHALTTTTTTNTPNASSNSTVVPRNTTTTTTFAHNNVHHPLPPHSSQANTINRMFTSNKENNSTSERLQDPALPMLPPTLELKPKENNPFMIHKHHIPADEYSRNSNEFGLVTSDSLLNPTQKRSFTSSQKDDSESQQQHSLRHFIDDSPKPQSHNHHHHHHSSSIWPELDSMQSDRTQLSISIPISSSDFMSFTTSSPSNEKLTLSPLGHSRELDPIQMELGMGSGASNEANTRQANWIPITWESSMGGPLGEVLNLSNNSNASDQCGKNNNTSALNLMKDGWDNNPPLGSSPTGVLQKSAFGSLSNSSAGSSPRAENNKEGATLCNAL* >Glyma14g10100.3 sequence type=predicted peptide gene model=Glyma14g10100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKSCYHEKKCSKFFIGYSSGSISMHGALAGVRGPFTPSQWMELEHQALIYKYITSNVPVPTHLIPIRKALDSLGFCNFSTGLLRPNALGWGGFHLGFSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQLGHALTTTTTTNTPNASSNSTVVPRNTTTTTTFAHNNVHHPLPPHSSQANTINRMFTSNKENNSTSERLQDPALPMLPPTLELKPKENNPFMIHKHHIPADEYSRNSNEFGLVTSDSLLNPTQKRSFTSSQKDDSESQQQHSLRHFIDDSPKPQSHNHHHHHHSSSIWPELDSMQSDRTQLSISIPISSSDFMSFTTSSPSNEKLTLSPLGHSRELDPIQMELGMGSGASNEANTRQANWIPITWESSMGGPLGEVLNLSNNSNASDQCGKNNNTSALNLMKDGWDNNPPLGSSPTGVLQKSAFGSLSNSSAGSSPRAENNKEGATLCNAL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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