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Report for Sequence Feature Glyma14g09781

Feature Type:gene_model
Chromosome:Gm14
Start:7837270
stop:7840188
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g09781
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G14760AT Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:6321840-6323312 REVERSE LENGTH=328 SoyBaseE_val: 8.00E-55ISS
GO:0009555GO-bp Annotation by Michelle Graham. GO Biological Process: pollen development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PTHR10014Panther BASIC HELIX-LOOP-HELIX/LEUCINE ZIPPER TRANSCRIPTION FACTOR JGI ISS
PTHR10014:SF30Panther BASIC HELIX-LOOP-HELIX (BHLH) FAMILY PROTEIN JGI ISS
PF00010PFAM Helix-loop-helix DNA-binding domain JGI ISS
UniRef100_G7ICC1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bHLH85 n=1 Tax=Medicago truncatula RepID=G7ICC1_MEDTR SoyBaseE_val: 2.00E-113ISS
UniRef100_UPI000233B596UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B596 related cluster n=1 Tax=unknown RepID=UPI000233B596 SoyBaseE_val: 0ISS

Expression Patterns of Glyma14g09781
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g09781 not represented in the dataset
Glyma14g09781 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g09781
ParalogEvidenceComments
Glyma17g35423 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g09781 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g088400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g09781
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g09781
>Glyma14g09781.1   sequence type=CDS   gene model=Glyma14g09781   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACCTGCAGGAGCCTTCCCTGATGGAGAATGGGATTTCTTTCGCCGAATATTTGCCGGTGAGGATCATGAGCATGATTTATTCACACCCCAATTTCCACTTCTGCTTGATGGCGATGATGAATTGAACATTGTGACACAACCCACATTTTGTGCTGCTCCTGAAGTTGGTGAAAATGAGCGTATGTTTTATTCTTTAGATGCTCACCACTCAAATTCTTCTCAGTATATTTCACAAGAAAGTAGCCATAGTAATAGTAGCAATTGTAGTGGTGATGACACTATCTTCATTGCCAATCCGGGTAGCACAAACTATTATTTTAGTTACCCTGATCATGTGCTAGCAAATAATGCATGTGTATATTCCATGGATGAGAAATATTTTGCCTCTTTTGTCCCATCGCTTGCTGACATTGTAACGGAAGAGAGTGTCAAGTTGCATGAAGATGTAGCAAGTGATGACAGATTGGAGAATTCTGAATGCAATCAAATGGAACCTATCGTTTTTCCCAGCAAGCAGTTGCAGCTCAAAAGGAAGCTTGATGTGCCTGCTGAAGATAAAATGAACAAAGGATCTGAGAATCAAAAGAAAAGGGCTCGTGCTTTAAAAGATGGGCAAGGATGCATGAAAAACACATGGTCCAAGAAGAATCAGAAACATGCCAGCAACGGGGAAGAAGCAGAAGAGACTAATGCAGGTTCAGATGGGCAAAGCTCTAGTAGTAACATGTCAGAGGATGATAACATTTCTAAATCTGCTCTCAACTCAAATGGGAAAACAAGAGCAAGTAGGGGATCAGCAACAGATCCCCAGAGTCTGTATGCAAGGAAAAGAAGAGAGAGAATAAATGAGAGACTAAGAATCCTACAGAATCTTGTCCCAAATGGAACCAAGGTTGATATAAGCACAATGCTTGAAGAGGCAGTCAATTACGTGAAATTTTTGCAGCTCCAGATCAAGCTTTTAAGCTCCGATGATCTATGGATGTATGCTCCACTTGCTTACAATGGGCTTGATATTGGACTCAATCTCAACTCCCTATCACTTTAA
Predicted protein sequences of Glyma14g09781
>Glyma14g09781.1   sequence type=predicted peptide   gene model=Glyma14g09781   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEPAGAFPDGEWDFFRRIFAGEDHEHDLFTPQFPLLLDGDDELNIVTQPTFCAAPEVGENERMFYSLDAHHSNSSQYISQESSHSNSSNCSGDDTIFIANPGSTNYYFSYPDHVLANNACVYSMDEKYFASFVPSLADIVTEESVKLHEDVASDDRLENSECNQMEPIVFPSKQLQLKRKLDVPAEDKMNKGSENQKKRARALKDGQGCMKNTWSKKNQKHASNGEEAEETNAGSDGQSSSSNMSEDDNISKSALNSNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQLQIKLLSSDDLWMYAPLAYNGLDIGLNLNSLSL*






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