Glyma14g09701 - SoyBase

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Report for Sequence Feature Glyma14g09701

Feature Type:	gene_model
Chromosome:	Gm14
Start:	7751478
stop:	7761878
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g09701

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G43130	AT	Annotation by Michelle Graham. TAIR10: TBP-associated factor 4 \| chr5:17315608-17321144 REVERSE LENGTH=823	SoyBase	E_val: 0	ISS
GO:0006352	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, initiation	SoyBase	N/A	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005669	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: transcription factor TFIID complex	SoyBase	N/A	ISS
PTHR15138	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR15138:SF3	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF05236	PFAM	Transcription initiation factor TFIID component TAF4 family	JGI		ISS
PF12174	PFAM	RST domain of plant C-terminal	JGI		ISS
UniRef100_D3YBD2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription initiation factor n=1 Tax=Trifolium repens RepID=D3YBD2_TRIRP	SoyBase	E_val: 0	ISS
UniRef100_UPI000233B592	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B592 related cluster n=1 Tax=unknown RepID=UPI000233B592	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g09701

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g09701 not represented in the dataset	Glyma14g09701 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g09701

Paralog	Evidence	Comments
Glyma17g35470	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g09701 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g087700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g09701

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g09701

Limit To All Plant Sequences

>Glyma14g09701.1   sequence type=CDS   gene model=Glyma14g09701   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCCATCTATCATGAAGCTTCTAGAAGATGATGAGGATGAAACAATGCATTCAGGGGTGGATGTGGAAGCTTTCCAGGCTGCCCTAAATAGAGATATAGGTGGAGCTGGGTCTACTTCACAGTTTTCTGGTTCAGATGCAGTGTTGTCTCAAGGAAGCAATAATATATCAAGTCAATCTTTATCACAGTGGCCTACTTCTAACCATGACACCCAAACTGACTGTCAAAAGCAAGAATCTAAAACTGCACAACAGCAAGAGCAACCTTCATCTGAGGTGGAACTGAAGCAGCACGGATCTCTTGCGGAACAACTACAGCATGTTGCTTCTCAGGACATAAATACTCCTCATTTATCACAGAAACAATCTCAAGATGAATGCCACCAAGCACCAGCTGTACAAGTTTCCCTCCCCAATTCTCAAGCTATCGGAATTCAGAATTCTGGAAAAGATCCAGTCCTTAATAATGAGGTAGTAAAGAATCATAACCCCAGCAGTGAATCTCAGTATGCAAAGTTGCAGCAGATGAGTAATCAACAGGCTACAGTCTCTGAGCAGCCGAGTAGTCAAGGAAATCGTAGTACTAGTAAACAAGTACCATTTGGCATGTTGCTACCCATCTTGCTTCCTCAACTTGCCAAAGACAGAGCCATGCAACTTCAAACTTTATTTGCTAAATTGAAGAAAGAGGAGATACCGAAAGACAGTTTTGTGCGGCTTATGAAAGGTATCGTAGGGGATCAGATGCTTAGATTAGCATTAGCAAAGGTGCAAGTGCAACCACAGATAAGGCCCAATCAAGCATCTGCTGGGCAGCAGCACCCTATGAGGATGCCAACTGTTGGTTCAGGTGCAAGGCAATTGAATGATCCCCATGCTTTAGCACAGATGCACCAGAGAAGTATGAATGCTGCCGTTGACCAATCTCGCATGGGTTCTTCGGCTGGCCATACTATGGAGAGCAATGCTAGAAAATCTCAGGAACTGGATGTTAAATTAGAATCTCAAGGATTGCAACCAAGCCAATTGACATCTTCCAGTTCCAACACAGTTGGCCAAGAAATCGAAAGAACATCAGTTCACATACAAGGGCTTAATAAGCAGCAGCAACAACATCTACATTTCCCATCAGCATATGGAAATAGTGGTGTTAACTATAACCCTTTTTCTGGGACAACCAGTAGTTCCACTTCATCTATCAAATCACAATCGCATGATTCACACATGAGTCAAATTTTGCATCAAAGTATTGGTTCAAATCATCACTTAAGTGGGTCAACACATGGTTTGAATGTAATTGGTATGCCAAAACTTGAACAGCAGAATTCTTTTAATGATCCCAAGAGACTGCCAGGTGGATCTGTGTCTCCTGCTGTAAACAATACAGTGTCTCAACAAACTAAAAATGCTTGGCAACCATCAACAAACAAAGAACAAAATCTGGGCTTAATGTCATCTGTTTCTTATGTCAAAAAGGAACCTAGTGACTTATCTACTGAGCAGCAAAATAGGCATAGTTTGTCTAAATTGCATGGGTATTCTCCTGTTAATTCTGCTCAGCTTGAACAGGGTGGTGCTAGTCAAGGAACTGTAAAGGATGAGTTTTCAAGAGGTCAAGCACCTCCAAGCATGCCTCCTACATCTACTGGCTTGCTGCCACAAAGTTCTGCTTCCCCTTCTGTAATGACCCAACTAGACCCCAGTGTCTCGCTAAGCTCTCAGATCCCATCAAATGCTTCTGGAATTGGTGCAAGGACATCTCTTAAAAAGCCTGCTGCTGCCCAAAAGAAACCACATGAAGCACTTGGTTCCTCACCTCCTCCTGCAAATAAAAAACAAAAAACTTCTGGGGGATCTGTAGAACAAAGCATTGAACAACTTAATGATGTCACTGCTGTTAGTGGAGTTGACCTCAGGGAAGAGGAAGAGCAGTTATTTTCAGGGCCCAAAGAGGATAGTCGAGTGTCAGAAGCTTCTCGAAAGGCTGTACAAGAAGAAGAGGAAAGGCTGATCTTGCAGAAAGCTCCATTGCAAAAAAAATTAATTGACATCATGGCCAAGTGTGGCTTGAAGGGTATGAGCAATGATGTGGAGAAATGCTTGTCACTGTGTGTAGAGGAAAGGATGCGTGGGCTGATAAGTAACCTGATTAGAATATCAAAACAGAGGGTTGATTTTGAGAAAACAAGACATCGGACTGTTGTCACTTCAGATGTTCGGCAGCAAATCATGACAATAAATAGGAAAGTAAGGGAAGAGTGGGATAAAAAACAGGCAGAAGCAGAGAAGATTAGGAAACTAAATGATGTTGACAGCAATACTGGACTTGATGGTGACAAGGAGAAGGACGACGGCCGTGGTAAATCAATAAAGGTGAACAAGGAAGAGGATGAGAAGATGAGGACAAATGCTGCAAATGTTGCTGCCCGTGCTGCTTATGGAGGAGATGACATGCTGTCAAAGTGGCAACTAATGGCTGAGCAAGCCAAGCAGAAACGCGAAGGGGGGGTGGACGTGTTATCTGGTTCTCAACCAGCTAAAGATGTGAACCGCAAATTTTTATCAACATCTGGAAGAAGTACAAAGGATAATCAAGAAGGGGAGAAAAAAGGTTCATCTACTTTTATAGCAAGTTCAGTGGCTAGAAAACTTGGGAGGAGTCATGCCATGGCACTTCAAACTAGGGTAGCTCGAAGCATCTCTGTCAAGGATGTGATTGCAGTCCTGGAGAGGGAACCCCAGATGTCTAAATCTCCACTCATGCACCGCTTGTACGAGAGAATTCATTCGGATGCCCCAGTTTAA

Predicted protein sequences of Glyma14g09701

Limit To All Plant Sequences

>Glyma14g09701.1   sequence type=predicted peptide   gene model=Glyma14g09701   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPSIMKLLEDDEDETMHSGVDVEAFQAALNRDIGGAGSTSQFSGSDAVLSQGSNNISSQSLSQWPTSNHDTQTDCQKQESKTAQQQEQPSSEVELKQHGSLAEQLQHVASQDINTPHLSQKQSQDECHQAPAVQVSLPNSQAIGIQNSGKDPVLNNEVVKNHNPSSESQYAKLQQMSNQQATVSEQPSSQGNRSTSKQVPFGMLLPILLPQLAKDRAMQLQTLFAKLKKEEIPKDSFVRLMKGIVGDQMLRLALAKVQVQPQIRPNQASAGQQHPMRMPTVGSGARQLNDPHALAQMHQRSMNAAVDQSRMGSSAGHTMESNARKSQELDVKLESQGLQPSQLTSSSSNTVGQEIERTSVHIQGLNKQQQQHLHFPSAYGNSGVNYNPFSGTTSSSTSSIKSQSHDSHMSQILHQSIGSNHHLSGSTHGLNVIGMPKLEQQNSFNDPKRLPGGSVSPAVNNTVSQQTKNAWQPSTNKEQNLGLMSSVSYVKKEPSDLSTEQQNRHSLSKLHGYSPVNSAQLEQGGASQGTVKDEFSRGQAPPSMPPTSTGLLPQSSASPSVMTQLDPSVSLSSQIPSNASGIGARTSLKKPAAAQKKPHEALGSSPPPANKKQKTSGGSVEQSIEQLNDVTAVSGVDLREEEEQLFSGPKEDSRVSEASRKAVQEEEERLILQKAPLQKKLIDIMAKCGLKGMSNDVEKCLSLCVEERMRGLISNLIRISKQRVDFEKTRHRTVVTSDVRQQIMTINRKVREEWDKKQAEAEKIRKLNDVDSNTGLDGDKEKDDGRGKSIKVNKEEDEKMRTNAANVAARAAYGGDDMLSKWQLMAEQAKQKREGGVDVLSGSQPAKDVNRKFLSTSGRSTKDNQEGEKKGSSTFIASSVARKLGRSHAMALQTRVARSISVKDVIAVLEREPQMSKSPLMHRLYERIHSDAPV*

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