SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G24220 | AT | Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein | chr4:12565219-12566474 FORWARD LENGTH=388 | SoyBase | E_val: 0 | ISS |
| GO:0008202 | GO-bp | Annotation by Michelle Graham. GO Biological Process: steroid metabolic process | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0010051 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0035671 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: enone reductase activity | SoyBase | N/A | ISS |
| KOG1430 | KOG | C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases | JGI | ISS | |
| PTHR10366 | Panther | NAD DEPENDENT EPIMERASE/DEHYDRATASE | JGI | ISS | |
| PTHR10366:SF164 | Panther | JGI | ISS | ||
| UniRef100_I1M8S1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M8S1_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q2HRJ8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Progesterone 5-beta-reductase, putative n=1 Tax=Medicago truncatula RepID=Q2HRJ8_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma14g09650 not represented in the dataset |
Glyma14g09650 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g087400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g09650.1 sequence type=CDS gene model=Glyma14g09650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGAAACTCAACGAAGCACCACAAAGCGTGGCACTGGTTTTAGGCGTAACCGGCATCGTCGGCAACAGCCTCGCTCAGATTCTACCTCTCTCCAACACACGCGGCGGTCCATGGAAAGTTTACGGTGTGGCTCGTCGCACCCAACCAAGTTGGAACGCTCTAAACACCGTCCACTACATCCAGTGCGATATCTCCGACCAAAACGACGCCGAATCCAAGCTCTCATCTTTAACCGACGTCACTCACGTCTTCTATGTCTGCTGGGCCAGAAGGCCCACGGAGGCCCAAAACTGCCAAGTGAACGGTGCCATGTTGAGGAACGTTCTACGCGCCGTCATCCCGAATGCTCCCAATCTCCGCCACGTGTCACTCCAGACAGGCACCAAGCACTACCTCGGACCCTTCGAACTGTTAGGAAAGATCGAGGTCGCCCATGATCCGCCCTTCACGGAGGACTTGCCACGTCTTGACGCGCCGAATTTCTATTACACCCAGGAAGACATCTTGTTCGAGGAGGTTCGTAAGAAGGGTTTAACGTTAACGTGGTTCGTTAACCGACCACATTTTATCTTTGGTTTCTCCCCTTATAGCTTGATGAACCTCGTTGGGACCCTTTGTGTTTACGCTGCTATTTGCAAGCATGAGGGTGTTCCGTTGTGGTTTCCAGGGACGAAAGCTGTGTGGGAGTGTTATAACACTGCTTCGGATGCTGATTTGATTGCGGAGCAGCACATTTGGGGTGCAGTGGATCCACGCGCGAAGAACGAGGCGTTTAATTGTAGCAACGGGGACGTGTTCAAGTGGAAGCATGTTTGGAAGGTGTTGGCGGAGAGGTTTGGGATAAGGGAGTATGGGTTTTTGGAAGGTGAGGATTTGAGGTTGTCGGAGATGATGAAGGAAAAGGGTGCAGAAGAGATTGTGAAGAAGAATGGGTTGCAGAGAACGAAGCTTGAAGATGTTGGGGATTGGTGGTTTGCGGATCTTATTCTGAGAATGGAGGCTGTGTTGGATAGCATGAACAAGGCGAGGGAGCACGGGTTTTTTGGATTTAGGGACTCCAAGAAATCGTTTATGAATTGGATAGATAAGACCAAAGCTTGCAAGATCGTACCATGA
>Glyma14g09650.1 sequence type=predicted peptide gene model=Glyma14g09650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSKLNEAPQSVALVLGVTGIVGNSLAQILPLSNTRGGPWKVYGVARRTQPSWNALNTVHYIQCDISDQNDAESKLSSLTDVTHVFYVCWARRPTEAQNCQVNGAMLRNVLRAVIPNAPNLRHVSLQTGTKHYLGPFELLGKIEVAHDPPFTEDLPRLDAPNFYYTQEDILFEEVRKKGLTLTWFVNRPHFIFGFSPYSLMNLVGTLCVYAAICKHEGVPLWFPGTKAVWECYNTASDADLIAEQHIWGAVDPRAKNEAFNCSNGDVFKWKHVWKVLAERFGIREYGFLEGEDLRLSEMMKEKGAEEIVKKNGLQRTKLEDVGDWWFADLILRMEAVLDSMNKAREHGFFGFRDSKKSFMNWIDKTKACKIVP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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