Glyma14g09620 - SoyBase

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Report for Sequence Feature Glyma14g09620

Feature Type:	gene_model
Chromosome:	Gm14
Start:	7694932
stop:	7696850
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g09620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G59845	AT	Annotation by Michelle Graham. TAIR10: Gibberellin-regulated family protein \| chr5:24111443-24111808 FORWARD LENGTH=89	SoyBase	E_val: 5.00E-33	ISS
GO:0009739	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF02704	PFAM	Gibberellin regulated protein	JGI		ISS
UniRef100_B9R733	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GAST1 protein, putative n=1 Tax=Ricinus communis RepID=B9R733_RICCO	SoyBase	E_val: 2.00E-44	ISS
UniRef100_C6T0H2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6T0H2_SOYBN	SoyBase	E_val: 4.00E-55	ISS

Expression Patterns of Glyma14g09620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g09620

Paralog	Evidence	Comments
Glyma17g35530	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g09620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g087200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g09620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g09620

Limit To All Plant Sequences

>Glyma14g09620.1   sequence type=CDS   gene model=Glyma14g09620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGTAGCATTTGTAGCTGTTCTACTTATTTGCCTTGTCCTAAGCTCCTCCTTGTTCGAGGTGTCAATGGCCGGTTCTGCTTTCTGCTCCTCCAAGTGCGCGAAGAGGTGTTCTAGGGCTGGGATGAAGGACAGGTGCACGAGGTTCTGCGGGATTTGCTGCAGCAAGTGTAGGTGTGTGCCATCTGGGACTTATGGGAACAAGCACGAGTGCCCTTGCTACAGAGACATGAAGAACTCCAAGGGCAAGCCCAAATGCCCTTGA

Predicted protein sequences of Glyma14g09620

Limit To All Plant Sequences

>Glyma14g09620.1   sequence type=predicted peptide   gene model=Glyma14g09620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKVAFVAVLLICLVLSSSLFEVSMAGSAFCSSKCAKRCSRAGMKDRCTRFCGICCSKCRCVPSGTYGNKHECPCYRDMKNSKGKPKCP*

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