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Report for Sequence Feature Glyma14g09580

Feature Type:gene_model
Chromosome:Gm14
Start:7666793
stop:7668602
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g09580
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G43070AT Annotation by Michelle Graham. TAIR10: WPP domain protein 1 | chr5:17289259-17289726 REVERSE LENGTH=155 SoyBaseE_val: 4.00E-38ISS
GO:0006913GO-bp Annotation by Michelle Graham. GO Biological Process: nucleocytoplasmic transport SoyBaseN/AISS
GO:0048527GO-bp Annotation by Michelle Graham. GO Biological Process: lateral root development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005640GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nuclear outer membrane SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
UniRef100_I1M8R6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M8R6_SOYBN SoyBaseE_val: 1.00E-79ISS
UniRef100_Q9M7N4UniRef Annotation by Michelle Graham. Most informative UniRef hit: MFP1 attachment factor 1 n=1 Tax=Glycine max RepID=Q9M7N4_SOYBN SoyBaseE_val: 3.00E-57ISS

Expression Patterns of Glyma14g09580
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g09580
ParalogEvidenceComments
Glyma17g35580 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g09580 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g086900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g09580
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma14g09580
>Glyma14g09580.2   sequence type=transcript   gene model=Glyma14g09580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATGATAAAAAGGTTAAGCCTCCCACCCATAGATTTTCTTCCTTGGAAGGCAACACATCCCACTGGTCACGTGTTGGTCCAAACATCCTTCTTCTTTTTATTTTCCGCACTTTAAAAACCACTATTCCACAACACACACCACACAAATCTCCTTCCTCGTAACAATGTCCGACACGGAAACCACGCTCGAGCAACCCTCCACTCCGCCGCAGCCCGACCCCTCCGCCGCCGTATCCTTCAGCATATGGCCCCCCACTCAGCGCACCCGCGACGCCGTCGTCAACCGCTTGATCGAGACCCTTTCCGCCCCCTCCGTCCTCTCCAAGCGCTACGGCACTCTCTCCTCCGACGAATCCTCCTCCGCCGCCCGCCAGATCGAGGACGAGGCCTTCTCCGCTGCCTCCTCTTCCGACGGCATTGAGACCCTCCAGGTCTACTCCAAGGAGATCAGCAAGCGCATGCTCGACACCGTTAAGGCCAGAGCTGCGCCGATTCCCTCCGCCGAAGAGGGCGTCGCCGCCTCCGTCTCCGACTAATTGTGTGTTCTGCGATGATGTAGAGTTACTTTCTCTTGTGTGCGTGTAGGTTTTTGTTGCATCCAATTGTGGTAATAATATTAATCCATCAATTTCATTCTCATCATGTAGTGTTTGCGTGTTGAGTTTTATAAATTGAGCTTCTCAGATTTTGTGCGCGATTGAAACTATATTTATCTCAGGTGATGTTGTGAGTGTATCCGTGATAATATTTAATTCCATGGGCAGATGAACTTACTGATTAGCCGCTATTTGAAATGTTCTGATTTATTTGCCGTTTGTTTGAATCAAACCATGTGCCAAGATTCCAACCAATGGTGCTTCTTTTGTTCTGCAAGCACGTTAGAGTTTATTGTGTTAATCATTTGTGTTATTTAATTGCAACTATTTCTCCCTTCGATTCTGGCTGATTAACATCCCATTTAACTTTGTTTTGTTGTTTCTGTAAGTTGTGATCTGCAACTTCTTACCTATGTAGCAATCTTGAACTGACATATGCATGTCTGACTACAAGTTGTCTTCTTATTTTCTTATACCTTGTAAGTCTACAATCATATACGCCTGGTTGGATCATAATCCTTCTCCTGTTGAGAGATTTTAGTTTCCATGTTGAAGATGATCAAAGTGACAGGGCAGTGTTAGCCCGTATTCACAACAACACTTTGATTAATATATCATTAGGGTATTTTTGTGTGATTAAGGAAGGTAGCATAGACCATTGAGTGGTTGATATTGGTAAAGGCATCCCACTTTTTGAATTTTTTGTCATGGAGTTTTGGTGACAGTCTGGGTGGAGAATAGAAAAAAAAAGTAAAAAATATATAAACGAGAGGATCATAACTCATAAATGTAAAGTGTCAGGGCAAATTTGGAC
Coding sequences of Glyma14g09580
>Glyma14g09580.1   sequence type=CDS   gene model=Glyma14g09580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCGACACGGAAACCACGCTCGAGCAACCCTCCACTCCGCCGCAGCCCGACCCCTCCGCCGCCGTATCCTTCAGCATATGGCCCCCCACTCAGCGCACCCGCGACGCCGTCGTCAACCGCTTGATCGAGACCCTTTCCGCCCCCTCCGTCCTCTCCAAGCGCTACGGCACTCTCTCCTCCGACGAATCCTCCTCCGCCGCCCGCCAGATCGAGGACGAGGCCTTCTCCGCTGCCTCCTCTTCCGACGGCATTGAGACCCTCCAGGTCTACTCCAAGGAGATCAGCAAGCGCATGCTCGACACCGTTAAGGCCAGAGCTGCGCCGATTCCCTCCGCCGAAGAGGGCGTCGCCGCCTCCGTCTCCGACTAA

>Glyma14g09580.2   sequence type=CDS   gene model=Glyma14g09580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCGACACGGAAACCACGCTCGAGCAACCCTCCACTCCGCCGCAGCCCGACCCCTCCGCCGCCGTATCCTTCAGCATATGGCCCCCCACTCAGCGCACCCGCGACGCCGTCGTCAACCGCTTGATCGAGACCCTTTCCGCCCCCTCCGTCCTCTCCAAGCGCTACGGCACTCTCTCCTCCGACGAATCCTCCTCCGCCGCCCGCCAGATCGAGGACGAGGCCTTCTCCGCTGCCTCCTCTTCCGACGGCATTGAGACCCTCCAGGTCTACTCCAAGGAGATCAGCAAGCGCATGCTCGACACCGTTAAGGCCAGAGCTGCGCCGATTCCCTCCGCCGAAGAGGGCGTCGCCGCCTCCGTCTCCGACTAA
Predicted protein sequences of Glyma14g09580
>Glyma14g09580.1   sequence type=predicted peptide   gene model=Glyma14g09580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDTETTLEQPSTPPQPDPSAAVSFSIWPPTQRTRDAVVNRLIETLSAPSVLSKRYGTLSSDESSSAARQIEDEAFSAASSSDGIETLQVYSKEISKRMLDTVKARAAPIPSAEEGVAASVSD*

>Glyma14g09580.2   sequence type=predicted peptide   gene model=Glyma14g09580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDTETTLEQPSTPPQPDPSAAVSFSIWPPTQRTRDAVVNRLIETLSAPSVLSKRYGTLSSDESSSAARQIEDEAFSAASSSDGIETLQVYSKEISKRMLDTVKARAAPIPSAEEGVAASVSD*






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