Glyma14g09460 - SoyBase

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Report for Sequence Feature Glyma14g09460

Feature Type:	gene_model
Chromosome:	Gm14
Start:	7529443
stop:	7531743
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g09460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G47056	AT	Annotation by Michelle Graham. TAIR10: VIER F-box proteine 1 \| chr1:17276103-17277659 REVERSE LENGTH=518	SoyBase	E_val: 0	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
KOG1947	KOG	Leucine rich repeat proteins, some proteins contain F-box	JGI		ISS
PTHR23125	Panther	F-BOX/LEUCINE RICH REPEAT PROTEIN	JGI		ISS
PTHR23125:SF44	Panther	SKIP-2, ARATH	JGI		ISS
PF00646	PFAM	F-box domain	JGI		ISS
UniRef100_Q2HTR2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cyclin-like F-box n=1 Tax=Medicago truncatula RepID=Q2HTR2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233B6E4	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B6E4 related cluster n=1 Tax=unknown RepID=UPI000233B6E4	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g09460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g09460

Paralog	Evidence	Comments
Glyma17g35690	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g09460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g086000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g09460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g09460

Limit To All Plant Sequences

>Glyma14g09460.1   sequence type=CDS   gene model=Glyma14g09460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGACAATCTGTTTCCTCCGCCGCCGTCGCAAGCCGTCGTGAGAGGGATCCAGGCCACCTCTCCGTCAACACCTCCAAGACCAGATCCACCGCCTTGATTACGCCGATGGCCGGTTATTCCTCCGGCGCCGGCGAAGACGAAAGCGAAAACCGTCGTGGCGAGGCCGTTACTGATGAAACCACCGACTACATCTCCGATCTCCCTAACGAGTGCCTGGCTTCGGTGTTTCAGTTTCTTAGCTCCGCCGATCGGAACCGCTGCTCGCTCGTTTGCCGGCGGTGGCTCCAGATCGAAGGACAGAGTCGTCACAGGCTTTCTCTGAACGCGGATGAGGATCTGTTTCCAGCGATTCCGTCGCTGTTCTCTCGGTTCGATTCGGTGACGAAGCTCGCGTTGAAGTGCGACCGCAGATCCGTGAGCATAAGCGACGACGCGCTCGTGCTGATCTCGCAGCGGTGCCCTAACCTCACGCGCCTCAAGCTCCGCGCGTGCCGCGCCCTCACCGACGCTGGAATGGAAGCGTTCGCGAAGAACTGCAAGGGATTGAAGAAGCTCTCCTGCGGATCGTGCACGTTCGGATCCAAAGGCATGAACGCGGTGCTCGACAACTGCGCCGCGCTGGAGGAGCTCTCAGTCAAGCGCCTCCGCGGAATCACCGACGCGGCGGCGGCGGAGCCGATCGGTCCCGGCGTGGCTGCGGCGTCGCTGAAAATCGTTTGCCTGAAGGAGCTCTACAACGGACAGTGTTTCGGAACGCTGATTCTCGGGGCTAAGAATCTGAAAACCTTGAAGCTTTTCCGGTGCTCCGGGGATTGGGACCGGCTCTTTCAGTTAATGGCAGATCGAGTCACGAACATGGTCGAAGTTCACCTCGAGAGGCTTCAGATTAGCGACGTTGGATTGCAAGCGATCGCGAATTTTTCGAGTTTGGAGATTTTGCATCTCGTTAAGACTCCTGAATGTTCTGATATTGGACTTGTTGCTATTGCAGACAGGTGCAAGCTTTTGCGGAAGCTTCACATTGATGGATGGAAGGCAAATCGAATTGGCGACGAAGGGTTGATAGCTGTTGCAAAAGGTTGCCCTAATTTGCTTGAATTAGTGCTAATTGGGGTAAACCCTACTAAGGCGAGTTTGGAAATGTTGGCATCTAATTGCCGGAATCTTGAGCGGTTGGCTTTGTGTGGAAGTGATTCGGTTGGTGATACTGAGATATCTTGCATTGCTGCAAAGTGTGTGGCTTTGAAGAAACTGTGTATTAAGAGTTGTCCTGTTTCGGATCAAGGGATGGAGGCATTGGCAAATGGGTGTCCGAATTTGGTGAAAGTTAAGGTTAAGAAGTGTAAGGGGGTTACCCCTGAGGGTGGTGATTGGTTGAGGAGGACTAGAGGGTCAGTTGCTGTTAATTTAGATACTGGTGAGGCAGAGCTTCAGGAAGCGAGTGCTAGTGATGGAGGGGCACAGGACAATGTTGTAGAGTTTCCTCAGATGCCTGCCCAAATCGTGGCCGCAGCAGCATCTGCATCAAGCAGCACCACTCGGTCTAGTTCGTTCAAGTTGAGATTAGGGCTTTTGTCTGGGAGGAGTTTAGTGGCTAGCACTTTTAAGAGATGGTCAGGTGGTAGCACTAGTGCACGCCATGGTTAG

Predicted protein sequences of Glyma14g09460

Limit To All Plant Sequences

>Glyma14g09460.1   sequence type=predicted peptide   gene model=Glyma14g09460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGQSVSSAAVASRRERDPGHLSVNTSKTRSTALITPMAGYSSGAGEDESENRRGEAVTDETTDYISDLPNECLASVFQFLSSADRNRCSLVCRRWLQIEGQSRHRLSLNADEDLFPAIPSLFSRFDSVTKLALKCDRRSVSISDDALVLISQRCPNLTRLKLRACRALTDAGMEAFAKNCKGLKKLSCGSCTFGSKGMNAVLDNCAALEELSVKRLRGITDAAAAEPIGPGVAAASLKIVCLKELYNGQCFGTLILGAKNLKTLKLFRCSGDWDRLFQLMADRVTNMVEVHLERLQISDVGLQAIANFSSLEILHLVKTPECSDIGLVAIADRCKLLRKLHIDGWKANRIGDEGLIAVAKGCPNLLELVLIGVNPTKASLEMLASNCRNLERLALCGSDSVGDTEISCIAAKCVALKKLCIKSCPVSDQGMEALANGCPNLVKVKVKKCKGVTPEGGDWLRRTRGSVAVNLDTGEAELQEASASDGGAQDNVVEFPQMPAQIVAAAASASSSTTRSSSFKLRLGLLSGRSLVASTFKRWSGGSTSARHG*

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