Glyma14g09450 - SoyBase

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Report for Sequence Feature Glyma14g09450

Feature Type:	gene_model
Chromosome:	Gm14
Start:	7521048
stop:	7525961
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g09450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G07390	AT	Annotation by Michelle Graham. TAIR10: Mannose-P-dolichol utilization defect 1 protein \| chr4:4195750-4197317 FORWARD LENGTH=235	SoyBase	E_val: 5.00E-129	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
KOG3211	KOG	Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization	JGI		ISS
PTHR12226	Panther	MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1 (LEC35)-RELATED	JGI		ISS
PTHR12226:SF2	Panther	gb def: similarity to lec35 protein [magnaporthe grisea]	JGI		ISS
PF04193	PFAM	PQ loop repeat	JGI		ISS
UniRef100_C6TJ27	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TJ27_SOYBN	SoyBase	E_val: 1.00E-166	ISS
UniRef100_E5GB83	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mannose-P-dolichol utilization defect 1 protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GB83_CUCME	SoyBase	E_val: 3.00E-140	ISS

Expression Patterns of Glyma14g09450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g09450

Paralog	Evidence	Comments
Glyma17g35700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g09450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g085900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g09450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g09450

Limit To All Plant Sequences

>Glyma14g09450.1   sequence type=CDS   gene model=Glyma14g09450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATATCTTGGGATTGATCTAAGCTGCGCCGTTGGATCTCTCCGCCACGGCCAGTTACCGGAGAAGGACTGCTTGCTCCCTCTCATTTCCAAACTCCTCGGCTACGCCATCGTCGCGGCTTCCACCACCGTCAAACTCCCCCAGATTATGAAAATTCTGAAGCATCAGAGTGTGAGAGGACTTAGCATGATATCCTTCGAGCTTGAAGTTATTGGATATACCATTGCCTTGGCTTACTGTCTCCACAAAGGCCTTCCGTTTTCGGCTTACGGAGAGTTGTTGTTTCTTTTGATCCAAGCTTTAGTATTGGTTGCCATAATCTACTACTATTCTCGACCTTTGCATGCAATAACATGGATCCGAGCATTGCTATATTGTGCTGTTGCACCCACTGTCTTAGCTGGTCAAATTGATCCTCTCCTCTTTGAAGCTCTGTATGCATCCCAGCATGCAATCTTTCTCTTTGCAAGGATCCCTCAAATATGGCAAAACTTTTCTAACAAAAGTACAGGGGAACTCAGCTTCATAACTTCTTTTATGAATTTTGGAGGTTCAATGGTTAGAGTATTCACCACCATCCAAGAAAATGCACCGAAAAGTGTTCTATTGGGCTATGCAATTGGTGTCGCAACAAATTTTACCATCTTGAGTCAGATTATAGCATACCAAAAGCCTCAGGTTGGAAAGGAGAAGAAAACAAAGTAA

Predicted protein sequences of Glyma14g09450

Limit To All Plant Sequences

>Glyma14g09450.1   sequence type=predicted peptide   gene model=Glyma14g09450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEYLGIDLSCAVGSLRHGQLPEKDCLLPLISKLLGYAIVAASTTVKLPQIMKILKHQSVRGLSMISFELEVIGYTIALAYCLHKGLPFSAYGELLFLLIQALVLVAIIYYYSRPLHAITWIRALLYCAVAPTVLAGQIDPLLFEALYASQHAIFLFARIPQIWQNFSNKSTGELSFITSFMNFGGSMVRVFTTIQENAPKSVLLGYAIGVATNFTILSQIIAYQKPQVGKEKKTK*

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