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Report for Sequence Feature Glyma14g09380

Feature Type:gene_model
Chromosome:Gm14
Start:7402009
stop:7408722
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g09380
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G36480AT Annotation by Michelle Graham. TAIR10: long-chain base1 | chr4:17218598-17221124 FORWARD LENGTH=482 SoyBaseE_val: 0ISS
GO:0016049GO-bp Annotation by Michelle Graham. GO Biological Process: cell growth SoyBaseN/AISS
GO:0030148GO-bp Annotation by Michelle Graham. GO Biological Process: sphingolipid biosynthetic process SoyBaseN/AISS
GO:0043067GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of programmed cell death SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004758GO-mf Annotation by Michelle Graham. GO Molecular Function: serine C-palmitoyltransferase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0016740GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity SoyBaseN/AISS
GO:0030170GO-mf Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding SoyBaseN/AISS
KOG1358 KOG Serine palmitoyltransferase JGI ISS
PTHR13693Panther CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE JGI ISS
PTHR13693:SF2Panther SERINE PALMITOYLTRANSFERASE 2-RELATED JGI ISS
PF00155PFAM Aminotransferase class I and II JGI ISS
UniRef100_G7K743UniRef Annotation by Michelle Graham. Most informative UniRef hit: Serine palmitoyltransferase n=1 Tax=Medicago truncatula RepID=G7K743_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1M8P8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M8P8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma14g09380
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g09380
ParalogEvidenceComments
Glyma17g35800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g09380 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g085100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g09380
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g09380
>Glyma14g09380.1   sequence type=CDS   gene model=Glyma14g09380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCAGCCGTCGTGAATTTCTTGAACGCGACGTTGGATTGGATGACGTTCGCGTCGGATGGTCCTTCTGCGCGAGCTGTAGTTTTCGGAGTCCATATCGGTGGACATTTGTTTATCGAAGTGTTTTTGCTGGTGGTCATACTTTTCTTGCTTTCACAGAAAAGCTACAAGCCTCCTAAAAGGCCTTTAACAAATAAGGAAATTGATGAGTTATGTGACGAATGGGTTCCAGAACCCCTTATTCCTTCTGTTAATAAAGAGTTGCAGTATGAACCACCAGTGCTGGAGAGTGCTGCTGGGCCACATACCATAATTAATGGCAAAGAAGTTGTCAATTTTGCTTCAGCAAACTATCTTGGGTTTATAGGTCATCCAAAGCTACTTGACTCATGTTCTTCTGCTTTAGCGAAATACGGTGTTGGCTCTTGTGGTCCCCGTGGATTTTATGGGACAATTGATGTCCACCTTGACTGTGAAGCAAGAATAGCAAAATTTTTAGGAACCCCTGAATCAATTCTGTACTCTTATGGACTTTCCACCATGTTCAGTGCAATTCCTGCTTTCTCTAAAAAAGGAGATATAATTGTGGCGGATGAGGGAGTCCACTGGGGAATACAGAATGGCCTTTATCTTTCTAGAAGCACAGTGGTGTATTTTAAGCACAATGACATGGATGCTTTAAGAGAAACTCTAGAGAACATTACTTCCAAATATAAGAAGACCAAGAATCTGAGGCGTTATATTGTTGTTGAAGCTGTCTACCAGAATTCTGGGCAAATAGCTCCCTTGGACGAGATCATTAAATTGAAGGAAAAATATCGCTTTCGTGTTTTGCTAGATGAGAGCAACTCATTGGGTGTGCTTGGAAGTTCTGGAAGAGGTCTCACTGAACACTGTGGAGTTCCAGTTGAGAAGATAGACATTATAACTGCTGCTATGGGACATGCATTGGCCACAGAAGGAGGATTCTGCACCGGAAGTACAAGAGTTATAGATCACCAAAGATTGAGCAGCTCTGGTTATGTCTTCTCTGCTTCTTTGCCCCCATATCTTGCAAGCGCTGCTATTACAGCTATTGATGTCCTGGAGGAAAATCCCAATCTGATAAAAAAGCTGAAGAAAAATATTGCTTTTCTAAGAAAAGGATTGTCAAAAATACCAGGCATCACAATTGCAAGTAATCCAGAGTCACCTATTGTTTATTTGAGATTAGAGAAATCAAGAGGTTCAGTGAAAGATGACCTGCATCTGCTTGAAAATATCGCAGAGCGGGTTTTGAATGAAGAATCTGTATTTGTGGTGGTTTCCAAAAGATCAACATTGGACAAATGCCGTTTGCCTGTGGGAATTAGATTGTTTGTTTCTGCTGGGCATTCAGAGTCTGATCTGCTCAAGGCATCTGAATCATTGAAAAGGGTTGTGGCATCAGTCCTGGGTGGTCATAATTGA
Predicted protein sequences of Glyma14g09380
>Glyma14g09380.1   sequence type=predicted peptide   gene model=Glyma14g09380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASAVVNFLNATLDWMTFASDGPSARAVVFGVHIGGHLFIEVFLLVVILFLLSQKSYKPPKRPLTNKEIDELCDEWVPEPLIPSVNKELQYEPPVLESAAGPHTIINGKEVVNFASANYLGFIGHPKLLDSCSSALAKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPESILYSYGLSTMFSAIPAFSKKGDIIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDALRETLENITSKYKKTKNLRRYIVVEAVYQNSGQIAPLDEIIKLKEKYRFRVLLDESNSLGVLGSSGRGLTEHCGVPVEKIDIITAAMGHALATEGGFCTGSTRVIDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPNLIKKLKKNIAFLRKGLSKIPGITIASNPESPIVYLRLEKSRGSVKDDLHLLENIAERVLNEESVFVVVSKRSTLDKCRLPVGIRLFVSAGHSESDLLKASESLKRVVASVLGGHN*






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