Glyma14g09310 - SoyBase

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Report for Sequence Feature Glyma14g09310

Feature Type:	gene_model
Chromosome:	Gm14
Start:	7317935
stop:	7319966
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g09310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G46480	AT	Annotation by Michelle Graham. TAIR10: WUSCHEL related homeobox 4 \| chr1:17236903-17237953 REVERSE LENGTH=251	SoyBase	E_val: 4.00E-68	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0010067	GO-bp	Annotation by Michelle Graham. GO Biological Process: procambium histogenesis	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF00046	PFAM	Homeobox domain	JGI		ISS
UniRef100_B9R791	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9R791_RICCO	SoyBase	E_val: 6.00E-94	ISS
UniRef100_I1M8P2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M8P2_SOYBN	SoyBase	E_val: 2.00E-171	ISS

Expression Patterns of Glyma14g09310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g09310

Paralog	Evidence	Comments
Glyma17g35880	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g09310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g084600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g09310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g09310

Limit To All Plant Sequences

>Glyma14g09310.3   sequence type=transcript   gene model=Glyma14g09310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCAAACAACCTATCATGAAGTTCTCCACCATATGGTATAGTAAGTAACTAAAATTAAGCATGAAGGTGCATCAGTTCGCACGTGGATTCTGGGAGCACGAACCCTCCCTCACACTCGGGTGCAAACGCTTACGCCCCCTTGCCCCCAAGCTTTCCAACACCGACACCATTTCTCCACCTCATCATCCTGTTACAACCTTCGACCTCAAGAGCTTCATCAAACCTGAAAGTGCCTCCAGAAAACTTGGAATTGGATCCTCCGATGATAATACTAATAAGAGAGACCCATCTTCACCCCAGGGCCAGGCTGAAACGCATATTCCAGGAGGGACACGGTGGAATCCGACTCAAGAACAAATAGGGATATTGGAGATGCTGTACAGAGGAGGGATGCGAACTCCGAATGCTCAACAAATAGAGCAGATCACAGCACAGCTTAGCAAGTACGGCAAGATCGAAGGGAAGAACGTGTTCTATTGGTTCCAAAACCACAAAGCACGCGAGAGACAGAAGCAGAAGCGTAACAACCTAGGCCTTGCTCATAGTCCTCGTACTACTCTCACCACTTCACCCCCCTTTAGTTGTTGTGTAATTACCACTATGGACACCACAAAACGGGGGGAAGTAGTAGAAAGAGAGGAGGAAGATAGCCCGTTGAAGAAGTGTAGGAGCTGGGCGTTTGAGTACTTGGAAGACCAAAGAGAGGAGGAACATAGAACTCTGGAGCTTTTCCCATTGCACCCGGAAGGCAGATGAAGGGCGCAGTGGGTGAGAATAAATCGAAGCTTTTAGGTTAAAAGGAGGAGCTACGGACACTGAAGTCCCCGCACCTACTACTACTACTTCTTAAATCTTAAACCTAAGTTATATACGACCCTTTTCACGTCTTGAGTTTGGTTCAATTTGAAAAAAGCATATGATTGTCCTCTATTTAGCCAAACATAAGTGTATGTTTGGTTGTATAGAAGAGAGAAAAATTAAAAATAAAAATTGAAAAGAAATATTTAAATTAAAATAGAAA

Coding sequences of Glyma14g09310

Limit To All Plant Sequences

>Glyma14g09310.1   sequence type=CDS   gene model=Glyma14g09310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGTGCATCAGTTCGCACGTGGATTCTGGGAGCACGAACCCTCCCTCACACTCGGGTGCAAACGCTTACGCCCCCTTGCCCCCAAGCTTTCCAACACCGACACCATTTCTCCACCTCATCATCCTGTTACAACCTTCGACCTCAAGAGCTTCATCAAACCTGAAAGTGCCTCCAGAAAACTTGGAATTGGATCCTCCGATGATAATACTAATAAGAGAGACCCATCTTCACCCCAGGGCCAGGCTGAAACGCATATTCCAGGAGGGACACGGTGGAATCCGACTCAAGAACAAATAGGGATATTGGAGATGCTGTACAGAGGAGGGATGCGAACTCCGAATGCTCAACAAATAGAGCAGATCACAGCACAGCTTAGCAAGTACGGCAAGATCGAAGGGAAGAACGTGTTCTATTGGTTCCAAAACCACAAAGCACGCGAGAGACAGAAGCAGAAGCGTAACAACCTAGGCCTTGCTCATAGTCCTCGTACTACTCTCACCACTTCACCCCCCTTTAGTTGTTGTGTAATTACCACTATGGACACCACAAAACGGGGGGAAGTAGTAGAAAGAGAGGAGGAAGATAGCCCGTTGAAGAAGTGTAGGAGCTGGGCGTTTGAGTACTTGGAAGACCAAAGAGAGGAGGAACATAGAACTCTGGAGCTTTTCCCATTGCACCCGGAAGGCAGATGA

>Glyma14g09310.3   sequence type=CDS   gene model=Glyma14g09310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGTGCATCAGTTCGCACGTGGATTCTGGGAGCACGAACCCTCCCTCACACTCGGGTGCAAACGCTTACGCCCCCTTGCCCCCAAGCTTTCCAACACCGACACCATTTCTCCACCTCATCATCCTGTTACAACCTTCGACCTCAAGAGCTTCATCAAACCTGAAAGTGCCTCCAGAAAACTTGGAATTGGATCCTCCGATGATAATACTAATAAGAGAGACCCATCTTCACCCCAGGGCCAGGCTGAAACGCATATTCCAGGAGGGACACGGTGGAATCCGACTCAAGAACAAATAGGGATATTGGAGATGCTGTACAGAGGAGGGATGCGAACTCCGAATGCTCAACAAATAGAGCAGATCACAGCACAGCTTAGCAAGTACGGCAAGATCGAAGGGAAGAACGTGTTCTATTGGTTCCAAAACCACAAAGCACGCGAGAGACAGAAGCAGAAGCGTAACAACCTAGGCCTTGCTCATAGTCCTCGTACTACTCTCACCACTTCACCCCCCTTTAGTTGTTGTGTAATTACCACTATGGACACCACAAAACGGGGGGAAGTAGTAGAAAGAGAGGAGGAAGATAGCCCGTTGAAGAAGTGTAGGAGCTGGGCGTTTGAGTACTTGGAAGACCAAAGAGAGGAGGAACATAGAACTCTGGAGCTTTTCCCATTGCACCCGGAAGGCAGATGA

Predicted protein sequences of Glyma14g09310

Limit To All Plant Sequences

>Glyma14g09310.1   sequence type=predicted peptide   gene model=Glyma14g09310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKVHQFARGFWEHEPSLTLGCKRLRPLAPKLSNTDTISPPHHPVTTFDLKSFIKPESASRKLGIGSSDDNTNKRDPSSPQGQAETHIPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLSKYGKIEGKNVFYWFQNHKARERQKQKRNNLGLAHSPRTTLTTSPPFSCCVITTMDTTKRGEVVEREEEDSPLKKCRSWAFEYLEDQREEEHRTLELFPLHPEGR*

>Glyma14g09310.3   sequence type=predicted peptide   gene model=Glyma14g09310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKVHQFARGFWEHEPSLTLGCKRLRPLAPKLSNTDTISPPHHPVTTFDLKSFIKPESASRKLGIGSSDDNTNKRDPSSPQGQAETHIPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLSKYGKIEGKNVFYWFQNHKARERQKQKRNNLGLAHSPRTTLTTSPPFSCCVITTMDTTKRGEVVEREEEDSPLKKCRSWAFEYLEDQREEEHRTLELFPLHPEGR*

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