SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G18440 | AT | Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear fragile X mental retardation-interacting protein 1, conserved region (InterPro:IPR019496); Has 1333 Blast hits to 1211 proteins in 205 species: Archae - 0; Bacteria - 137; Metazoa - 339; Fungi - 162; Plants - 70; Viruses - 6; Other Eukaryotes - 619 (source: NCBI BLink). | chr5:6113092-6115748 FORWARD LENGTH=4 | SoyBase | E_val: 3.00E-56 | ISS |
| GO:0000491 | GO-bp | Annotation by Michelle Graham. GO Biological Process: small nucleolar ribonucleoprotein complex assembly | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF10453 | PFAM | Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1) | JGI | ISS | |
| UniRef100_Q8RZK7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: P0432B10.22 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q8RZK7_ORYSJ | SoyBase | E_val: 3.00E-25 | ISS |
| UniRef100_UPI000233B422 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B422 related cluster n=1 Tax=unknown RepID=UPI000233B422 | SoyBase | E_val: 0 | ISS |
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Glyma14g09271 not represented in the dataset |
Glyma14g09271 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g35911 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g084400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g09271.1 sequence type=CDS gene model=Glyma14g09271 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTAACAATACCAACTCCTCCTCCTCAAAAACTCAACCCACTTTCTTGAATCCTCCTAATCCTAACCCCCAACATTTCTCGAAAAGCAATGGTGTGGGCAATCACCAAGGCCAAAACTTGATGCCCCCTTTTATGCAGCCACCCATGAATGCAGCACCTTTCATGAATGCTGCAAATCACAATCATTTTCCCTTGCATATGCCTCATATGGGTTTGCCTGGTCATCAACAGGGTCAACCACATGTGGGGGGTTTAGGTCCCCAAAACAGTGTTGGCAATGCCAATTACAACAATCCAATGTTTCCTCCTGTTCAGGGACAAGTCATGCAGAATCAAGCTCAATTCAATTTGTCTCCACTCCAGGGACAATTTTTAGCACAAAGTATTCTCAACATGCTTCAGCAGCCCAACATGAATATGAGTATGCCAAATGGCCAGTTTTGTGGCCCTTACCTTATGCAGAATATGAATCCGCAGTTACCTATGCAAATGCCAAACCCTTCTCAGGGGGTTCCGTATGGTATGCATCCTGGTTCCTGCCCCATGTTCGGGTTTCCAAACCAAGTGCCTCAGGCTATGGTCCCTCAGAATTCAATGTTTTCCACAAATCCCCAGTTAGGTTTTGTGCCCGGAAATCAGGTCCGGCCACAGATTGACCCAAACGAGAAAAACCTTAATCCACCAAACGTTAGTGCAAATTCTTTTGTATCATCATCCCCTTTTTCGTCTCAGCAGTTACAAGGGAATACTTCTGGATCACTTAATCCTAATTTGGCTCACACAAATAACTCTCAACCTCCTGCATTTATGAAACAGGAAAAACCTAATAGCAATATTAAAACTAATGTTCCAAACTCTAATTGGAAAGGATCACCTAGCAAAAACTTCAAAAATAAACCAAATCGAGGGGGGTTTCAAGCAGGATTCCAGAAGTCGAAATTTCATGATGTCAACAATGGAAAGAAGGGAAGTGGGTTTCCTATAGAACATAATGGCAAAGGGCCTAACAGTGGGAGGGGAGGACACTATGGTTTAAAACCAAAGGAACATAAGCAGCAACCAGAAAGATCCTTGTCTGTGACTTACACTGTGCAAGAGATCCAACAGTGGCGTGAAGCACGGAAAAAGAATCATCCTTTCAATAACAACATTCAGAAGAAGCACAGTGAACACCCAAAAGACAGGAAGGCCATTAATAGGGAGGTCTTACAAAGAGAGCTCAAGGAGGTGTTAGCGAAGCAAGCTGAATTGGGAGTTGAAGTTGCTGAAATACCATCATACTACTTGAAGAATTCTGACAATCAAGCTCTTCAGAGTGAAGGGAAAAACAAATTTACTGACAAAAGAAAATTCCAAAACAAGTTCAACAAGAAATCAGACAGAAAAGGTAGGTTCGCCAAGAGGCAGAAGTTTGATGACAAAGATTTTTCAGAAAGCCCCTCTTTGAAGAAGAGGAAGCCTACATTATTGCAGAAACTCCTGAGTTCAGATGTAAAGAGGGATAAGAGCCACCTGATTCAGGTTTTCAGGTTCATGGTAATGAATTCTTTCTTCAAACATTGTCTTGATAAGCCGCTGAGATATCCGTTGGTCGTGGTTAAAGAAAAGGGGTCTGAAGTTGATGGTGAAGAAAAATACTTGCACACCGGAAAAGATGTTCTTAAAGGAGGGAATGAGGAAACAGTTCAAAAAATTGTGACCTTCAATAATGATAATAGCCATGATTGTGAAGATGAAGATAGTGATGATGACGAGAATGATTCTATTGTTGATAATAATCTTCATAAAGATCCTTCTTCCTTGGTTAAAAGACAGTGTGATAGTGGCGAAGGAATTGGGAAATTTGATGAAGAGGAGGGAGAAATTATAGAATGA
>Glyma14g09271.1 sequence type=predicted peptide gene model=Glyma14g09271 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSNNTNSSSSKTQPTFLNPPNPNPQHFSKSNGVGNHQGQNLMPPFMQPPMNAAPFMNAANHNHFPLHMPHMGLPGHQQGQPHVGGLGPQNSVGNANYNNPMFPPVQGQVMQNQAQFNLSPLQGQFLAQSILNMLQQPNMNMSMPNGQFCGPYLMQNMNPQLPMQMPNPSQGVPYGMHPGSCPMFGFPNQVPQAMVPQNSMFSTNPQLGFVPGNQVRPQIDPNEKNLNPPNVSANSFVSSSPFSSQQLQGNTSGSLNPNLAHTNNSQPPAFMKQEKPNSNIKTNVPNSNWKGSPSKNFKNKPNRGGFQAGFQKSKFHDVNNGKKGSGFPIEHNGKGPNSGRGGHYGLKPKEHKQQPERSLSVTYTVQEIQQWREARKKNHPFNNNIQKKHSEHPKDRKAINREVLQRELKEVLAKQAELGVEVAEIPSYYLKNSDNQALQSEGKNKFTDKRKFQNKFNKKSDRKGRFAKRQKFDDKDFSESPSLKKRKPTLLQKLLSSDVKRDKSHLIQVFRFMVMNSFFKHCLDKPLRYPLVVVKEKGSEVDGEEKYLHTGKDVLKGGNEETVQKIVTFNNDNSHDCEDEDSDDDENDSIVDNNLHKDPSSLVKRQCDSGEGIGKFDEEEGEIIE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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