SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma14g09211

Feature Type:gene_model
Chromosome:Gm14
Start:7262591
stop:7265919
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g09211
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G45976AT Annotation by Michelle Graham. TAIR10: S-ribonuclease binding protein 1 | chr1:17199371-17200680 FORWARD LENGTH=325 SoyBaseE_val: 8.00E-152ISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009755GO-bp Annotation by Michelle Graham. GO Biological Process: hormone-mediated signaling pathway SoyBaseN/AISS
GO:0048573GO-bp Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG1100 KOG Predicted E3 ubiquitin ligase JGI ISS
PTHR14493Panther UNKEMPT-RELATED JGI ISS
PTHR14493:SF21Panther PROTEIN BINDING / ZINC ION BINDING JGI ISS
UniRef100_C6TAQ3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TAQ3_SOYBN SoyBaseE_val: 0ISS
UniRef100_G7I3I5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Baculoviral IAP repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7I3I5_MEDTR SoyBaseE_val: 0ISS

Expression Patterns of Glyma14g09211
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g09211 not represented in the dataset
Glyma14g09211 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g09211
ParalogEvidenceComments
Glyma17g35960 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g09211 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g083900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g09211
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g09211
>Glyma14g09211.1   sequence type=CDS   gene model=Glyma14g09211   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTCCCTCAGCACCACTTCCAACGGCACTACCAAAGCCAGCAGCAACAACAACAACAACAACAACAACAACAACAGCAGCCACAAACCAAAAACTTCAGAAATCTGCAAACAATCGATGGTCAGATGTCACAGCAGGTGGCGTTTTACAACCCCACTGATTTGCAAGAGCAGTCCCAACATCCACCCTATATTCCTCCGTTTCATGTTGTTGGGTTTGCTCCGGGTCCTGTTCCTCCTGCTGATGGCAGTGATGGTGGAGTGGATTTGCAATTGCAATGGAATTATGGTTTGGAGCCAGAGAGGAAGAGACTAAAAGAACAGGATTTTTTGGAGAACAATTCTCAGATATCTTCTGTTGATTTCCTTCAACCACGATCAGTGTCGACTGGGTTGGGCTTGTCACTAGACAATACTCACCTGACATCCACCGGAGACTCAGCTTTGTTGTCACTCATCGGTGATGACATCAAGTGTGAGTTGCAGCAGCAGGATGTAGAGATAGATAGATTTCTCAAAGTGCAGGGTGAACGTTTGCGGCAAGCAGTCTTGGAGAAGGTTCAGGCAACACAGCTTCAGAGTGTCTCACTCATCGAAGACAAAGTCCTTCAGAAACTTCGTGAGAAAGAAGCTGAGGTAGAAAGCATCAACAAGAGGAACATGGAACTCGAAGATCGAATGGAGCAGTTGACTGTGGAAGCTGGTACATGGCAACAGCGAGCAAGATATAATGAAAATATGATTTCTGCTCTCAAGTTCAACCTTCAGCAAGCATATGTCCAAAGCAGAGATAGTAAAGAAGGATGTGGTGACAGTGAGGTCGACGATACAGCTTCTTGCTGCAATGGCCGTTCCCTTGATTTTCATCTGCTTTCGAGGGAGAATACCGACATGAAAGAGATGATGACATGCAAGGCTTGCAGAGTCAATGAAGTGACCATGGTTTTGTTACCTTGTAAGCATCTTTGCCTCTGTAAAGATTGTGAAAGCAAGCTTAGTTTCTGTCCTCTATGTCAATCCTCCAAATTTATCGGCATGGAGGTCTACATGTAA
Predicted protein sequences of Glyma14g09211
>Glyma14g09211.1   sequence type=predicted peptide   gene model=Glyma14g09211   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFPQHHFQRHYQSQQQQQQQQQQQQQQPQTKNFRNLQTIDGQMSQQVAFYNPTDLQEQSQHPPYIPPFHVVGFAPGPVPPADGSDGGVDLQLQWNYGLEPERKRLKEQDFLENNSQISSVDFLQPRSVSTGLGLSLDNTHLTSTGDSALLSLIGDDIKCELQQQDVEIDRFLKVQGERLRQAVLEKVQATQLQSVSLIEDKVLQKLREKEAEVESINKRNMELEDRMEQLTVEAGTWQQRARYNENMISALKFNLQQAYVQSRDSKEGCGDSEVDDTASCCNGRSLDFHLLSRENTDMKEMMTCKACRVNEVTMVLLPCKHLCLCKDCESKLSFCPLCQSSKFIGMEVYM*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo