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Report for Sequence Feature Glyma14g08940

Feature Type:gene_model
Chromosome:Gm14
Start:6957380
stop:6961714
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g08940
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G23540AT Annotation by Michelle Graham. TAIR10: Mov34/MPN/PAD-1 family protein | chr5:7937772-7939339 FORWARD LENGTH=308 SoyBaseE_val: 0ISS
GO:0000085GO-bp Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle SoyBaseN/AISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0006623GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole SoyBaseN/AISS
GO:0006635GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation SoyBaseN/AISS
GO:0006833GO-bp Annotation by Michelle Graham. GO Biological Process: water transport SoyBaseN/AISS
GO:0006972GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic response SoyBaseN/AISS
GO:0007030GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi organization SoyBaseN/AISS
GO:0009266GO-bp Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus SoyBaseN/AISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009853GO-bp Annotation by Michelle Graham. GO Biological Process: photorespiration SoyBaseN/AISS
GO:0030163GO-bp Annotation by Michelle Graham. GO Biological Process: protein catabolic process SoyBaseN/AISS
GO:0043161GO-bp Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0043248GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome assembly SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0051788GO-bp Annotation by Michelle Graham. GO Biological Process: response to misfolded protein SoyBaseN/AISS
GO:0080129GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly SoyBaseN/AISS
GO:0000502GO-cc Annotation by Michelle Graham. GO Cellular Compartment: proteasome complex SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0008541GO-cc Annotation by Michelle Graham. GO Cellular Compartment: proteasome regulatory particle, lid subcomplex SoyBaseN/AISS
KOG1555 KOG 26S proteasome regulatory complex, subunit RPN11 JGI ISS
PTHR10410Panther JUN ACTIVATION DOMAIN BINDING PROTEIN JGI ISS
PTHR10410:SF5Panther 26S PROTEASOME REGULATORY SUBUNIT-RELATED JGI ISS
PF01398PFAM Mov34/MPN/PAD-1 family JGI ISS
UniRef100_B9R7G0UniRef Annotation by Michelle Graham. Most informative UniRef hit: 26S proteasome non-ATPase regulatory subunit, putative n=1 Tax=Ricinus communis RepID=B9R7G0_RICCO SoyBaseE_val: 0ISS
UniRef100_I1M8K6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=9 Tax=core eudicotyledons RepID=I1M8K6_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma14g08940
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g08940
ParalogEvidenceComments
Glyma17g36230 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g08940 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g081600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g08940
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma14g08940
>Glyma14g08940.2   sequence type=transcript   gene model=Glyma14g08940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTATTCTCATCATGATGGTTTCTACTTTCTTGGCCGAAACGTCAACCTTTGCGACGTCGTATTTAAGCGTCTCTGGAAAACCATAAGCGAAGCAAGCAATCATTTCTTCGTTTCTTTTCGTGAAACAAAAGAAAACAAAAGATTAGGTTTTGTGATGTCGGGCATGGAGAGGCTTCAGAGGATGTTCGCGGGTGCAGGTGGAGCGCTGGGCCATCCCCCACCGGATTCCCCCACCCTCGATTCCTCCGAGCAGGTCTACATCTCCTCCCTCGCCCTTCTCAAAATGCTCAAACACGGAAGAGCTGGGGTACCCATGGAAGTGATGGGTCTGATGTTGGGGGAGTTCGTGGATGAGTACACCGTTCGCGTTGTGGATGTGTTTGCGATGCCTCAGAGTGGGACCGGTGTCAGCGTTGAAGCTGTTGATCATGTTTTTCAGACTAATATGCTTGATATGTTGAAGCAAACTGGAAGGCCGGAGATGGTTGTGGGGTGGTATCACTCGCATCCTGGATTTGGGTGTTGGCTTTCTGGAGTGGACATTAATACGCAACAGAGTTTTGAGGCTTTAAATCAACGGGCAGTGGCTGTGGTGGTGGACCCCATTCAGAGTGTGAAAGGCAAAGTGGTAATTGATGCTTTCCGGCTGATTAATCCACAAACTATGATGCTAGGTCAGGAACCACGACAGACAACTTCCAACCTGGGCCATCTAAACAAGCCATCTATCCAAGCTCTGATCCATGGCTTGAATAGACATTATTACTCCATAGCAATTAATTACAGAAAGAATGAACTTGAAGAGAAGATGTTGCTTAACCTTCACAAAAAGAAGTGGACTGATGGTTTGACACTCAGGCATTTTGATTCACATTCTAAAACTAATGAACAGACTGTTCAGGAGATGCTAAGTTTAGCAGCCAAGTACAACAAGGCAGTGCAGGAGGAAGATGAACTGCCACCAGAAAAACTTGCAATTGCAAATGTGGGGAGGCAAGATGCTAAGAAGCACCTTGAAGAGCATGTTTCCAATTTGATGTCATCAAACATTGTTCAGACTTTGGGAATGATGCTTGACACGGTTGTTTTCTAGAGTTAGCTAGCATCGTCCATTGTATTGTTCCTTACTATAGTTAGCAACATTTCATTAATACTCTTGACATGTTTGTTAACAGAAATTGTTTTATTGTAAGTTTTTGCATTTTGTGTTTTCTTTAAAATGCAGGAGCAAAGCTACATTACATGTTAGAGGATGAAAATCATATTTTAATCTCTCTAAATGTAATGGAGGTCTTCGTGATCGTGCGCCAGTTTTATTTGTTTATTTGGCAGCCGTAGGATTTTACATATAAACAAAGTGTTGATTCAGTTGTAATTGGAATCGCGGAGCAACTAAAACTGCGTGTGAACTTTAGTACTATAATTTACAATATTGAGTGAATTGTTATTCCTGAAATAGTAAGGATCAGTCAAACTGGTTTCTAAAATAAATAAAATAGCAAATTAGTTTCTAAATTTGTAAATTATTAATCCAT
Coding sequences of Glyma14g08940
>Glyma14g08940.1   sequence type=CDS   gene model=Glyma14g08940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGGCATGGAGAGGCTTCAGAGGATGTTCGCGGGTGCAGGTGGAGCGCTGGGCCATCCCCCACCGGATTCCCCCACCCTCGATTCCTCCGAGCAGGTCTACATCTCCTCCCTCGCCCTTCTCAAAATGCTCAAACACGGAAGAGCTGGGGTACCCATGGAAGTGATGGGTCTGATGTTGGGGGAGTTCGTGGATGAGTACACCGTTCGCGTTGTGGATGTGTTTGCGATGCCTCAGAGTGGGACCGGTGTCAGCGTTGAAGCTGTTGATCATGTTTTTCAGACTAATATGCTTGATATGTTGAAGCAAACTGGAAGGCCGGAGATGGTTGTGGGGTGGTATCACTCGCATCCTGGATTTGGGTGTTGGCTTTCTGGAGTGGACATTAATACGCAACAGAGTTTTGAGGCTTTAAATCAACGGGCAGTGGCTGTGGTGGTGGACCCCATTCAGAGTGTGAAAGGCAAAGTGGTAATTGATGCTTTCCGGCTGATTAATCCACAAACTATGATGCTAGGTCAGGAACCACGACAGACAACTTCCAACCTGGGCCATCTAAACAAGCCATCTATCCAAGCTCTGATCCATGGCTTGAATAGACATTATTACTCCATAGCAATTAATTACAGAAAGAATGAACTTGAAGAGAAGATGTTGCTTAACCTTCACAAAAAGAAGTGGACTGATGGTTTGACACTCAGGCATTTTGATTCACATTCTAAAACTAATGAACAGACTGTTCAGGAGATGCTAAGTTTAGCAGCCAAGTACAACAAGGCAGTGCAGGAGGAAGATGAACTGCCACCAGAAAAACTTGCAATTGCAAATGTGGGGAGGCAAGATGCTAAGAAGCACCTTGAAGAGCATGTTTCCAATTTGATGTCATCAAACATTGTTCAGACTTTGGGAATGATGCTTGACACGGAGCAAAGCTACATTACATGTTAG

>Glyma14g08940.2   sequence type=CDS   gene model=Glyma14g08940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGGCATGGAGAGGCTTCAGAGGATGTTCGCGGGTGCAGGTGGAGCGCTGGGCCATCCCCCACCGGATTCCCCCACCCTCGATTCCTCCGAGCAGGTCTACATCTCCTCCCTCGCCCTTCTCAAAATGCTCAAACACGGAAGAGCTGGGGTACCCATGGAAGTGATGGGTCTGATGTTGGGGGAGTTCGTGGATGAGTACACCGTTCGCGTTGTGGATGTGTTTGCGATGCCTCAGAGTGGGACCGGTGTCAGCGTTGAAGCTGTTGATCATGTTTTTCAGACTAATATGCTTGATATGTTGAAGCAAACTGGAAGGCCGGAGATGGTTGTGGGGTGGTATCACTCGCATCCTGGATTTGGGTGTTGGCTTTCTGGAGTGGACATTAATACGCAACAGAGTTTTGAGGCTTTAAATCAACGGGCAGTGGCTGTGGTGGTGGACCCCATTCAGAGTGTGAAAGGCAAAGTGGTAATTGATGCTTTCCGGCTGATTAATCCACAAACTATGATGCTAGGTCAGGAACCACGACAGACAACTTCCAACCTGGGCCATCTAAACAAGCCATCTATCCAAGCTCTGATCCATGGCTTGAATAGACATTATTACTCCATAGCAATTAATTACAGAAAGAATGAACTTGAAGAGAAGATGTTGCTTAACCTTCACAAAAAGAAGTGGACTGATGGTTTGACACTCAGGCATTTTGATTCACATTCTAAAACTAATGAACAGACTGTTCAGGAGATGCTAAGTTTAGCAGCCAAGTACAACAAGGCAGTGCAGGAGGAAGATGAACTGCCACCAGAAAAACTTGCAATTGCAAATGTGGGGAGGCAAGATGCTAAGAAGCACCTTGAAGAGCATGTTTCCAATTTGATGTCATCAAACATTGTTCAGACTTTGGGAATGATGCTTGACACGGTTGTTTTCTAG
Predicted protein sequences of Glyma14g08940
>Glyma14g08940.1   sequence type=predicted peptide   gene model=Glyma14g08940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGMERLQRMFAGAGGALGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLRHFDSHSKTNEQTVQEMLSLAAKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGMMLDTEQSYITC*

>Glyma14g08940.2   sequence type=predicted peptide   gene model=Glyma14g08940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGMERLQRMFAGAGGALGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLRHFDSHSKTNEQTVQEMLSLAAKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGMMLDTVVF*






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