Glyma14g08880 - SoyBase

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Report for Sequence Feature Glyma14g08880

Feature Type:	gene_model
Chromosome:	Gm14
Start:	6908325
stop:	6912146
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g08880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G26550	AT	Annotation by Michelle Graham. TAIR10: heme oxygenase 2 \| chr2:11291584-11293426 REVERSE LENGTH=299	SoyBase	E_val: 3.00E-102	ISS
GO:0006788	GO-bp	Annotation by Michelle Graham. GO Biological Process: heme oxidation	SoyBase	N/A	ISS
GO:0010024	GO-bp	Annotation by Michelle Graham. GO Biological Process: phytochromobilin biosynthetic process	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004392	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme oxygenase (decyclizing) activity	SoyBase	N/A	ISS
KOG4480	KOG	Heme oxygenase	JGI		ISS
PTHR10720	Panther	HEME OXYGENASE	JGI		ISS
PF01126	PFAM	Heme oxygenase	JGI		ISS
UniRef100_E7ECB3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Heme oxygenase 2 n=1 Tax=Medicago sativa RepID=E7ECB3_MEDSA	SoyBase	E_val: 7.00E-111	ISS
UniRef100_I1M8J9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M8J9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g08880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g08880

Paralog	Evidence	Comments
Glyma17g36290	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g08880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g081000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g08880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g08880

Limit To All Plant Sequences

>Glyma14g08880.2   sequence type=transcript   gene model=Glyma14g08880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGGGGATTGGGGTAAATACGAAATAGGGTAGAATTAAAATTGTTGGCATGGACACTAGGATTTCTTGGTTAAGAAATGAAATTTGATTACACACGCAGCATAGAAGTGCAGAGCACTGAAAACGGTATCCATCAATCAATCAGCAGGGAAGAAAAAGAAAGGAAGGAGCGATGTGGTTAACAGCGAAACCCATTCGACAACTATGCTTCCCACTCCCAATCTCAGTCCCAAACAAGTTCTGCAATTGCAGCTTATCCATAACAGCAACAACCAACACCAACACCAACGCCGAAATTACTACTACTCTCACTCAAACTCCTAAGCCAAAGCCGAACCCTAAGTCGACGTTGAAGAAGCGAAAGAGGTACCGGAAGCTATATCCCGGAGAGACCACCGGCATCACCGAAGAGATGAGGTTCGTCGCCATGAGACTCCGCACCAACGACACCGTTTCTCAACAAGAACACCAATCGCATTCCGACGCGTGGCAGGCCTCCATGGAAGGCTTCCTCTCTTACCTCGTCGACAGCCACCTCATCTTCGCCACCCTCCAACGCATCGTCGACGAATCCGACAACGTTTCCTATGCATACATGAGGAAAACTGGGTTGGAAAGATCAGAAGGGCTGTTGAAGGATCTGAAATGGTTGGAGGAAGAAGGAAATATGATTCCGACTCCTGGTTCTCCAGGGCTTACATATGCCAAATATTTGGAGGAACTCGCAGAGATAAGCGCACCCTTGTTTCTCTCCCATTTCTACAATATCTATTTTTCTCATATAGCTGCTGGTCAGGTCATTGGAAAGAAGGTAGGTACTCACTACTCACTTTCCTTTCCCCTGTACTAGAAAATAGTTTTATGTATGAGGGAATACTATCACATGTTCCCTTTTAATGTAGTTCCTTTCTCAGTCTATCCAATTGAAAGAAAAATAGGGGTTCGATTCCTCAGAGAAAACTTTTTTGGGAGAGACAAAACCCACTTCAGTTATTTCAACGTATCGAGGGTTAGTCTCATGGCTTTCAACTATGGGGATACCTTACTTCCAGC

Coding sequences of Glyma14g08880

Limit To All Plant Sequences

>Glyma14g08880.1   sequence type=CDS   gene model=Glyma14g08880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGTTAACAGCGAAACCCATTCGACAACTATGCTTCCCACTCCCAATCTCAGTCCCAAACAAGTTCTGCAATTGCAGCTTATCCATAACAGCAACAACCAACACCAACACCAACGCCGAAATTACTACTACTCTCACTCAAACTCCTAAGCCAAAGCCGAACCCTAAGTCGACGTTGAAGAAGCGAAAGAGGTACCGGAAGCTATATCCCGGAGAGACCACCGGCATCACCGAAGAGATGAGGTTCGTCGCCATGAGACTCCGCACCAACGACACCGTTTCTCAACAAGAACACCAATCGCATTCCGACGCGTGGCAGGCCTCCATGGAAGGCTTCCTCTCTTACCTCGTCGACAGCCACCTCATCTTCGCCACCCTCCAACGCATCGTCGACGAATCCGACAACGTTTCCTATGCATACATGAGGAAAACTGGGTTGGAAAGATCAGAAGGGCTGTTGAAGGATCTGAAATGGTTGGAGGAAGAAGGAAATATGATTCCGACTCCTGGTTCTCCAGGGCTTACATATGCCAAATATTTGGAGGAACTCGCAGAGATAAGCGCACCCTTGTTTCTCTCCCATTTCTACAATATCTATTTTTCTCATATAGCTGCTGGTCAGGTCATTGGAAAGAAGGTTTCTGAAGAGCTCTTGGAAGGCAAGGAGTTGGAGTTTTACAAATGGGAAGGAGATGTACCTGACTTGTTGAAAGATGTTCGTGATAAGCTCAACATGCTTTCAGAGCATTGGTCTCGAGATGAAAAGAATAGATGTTTAAAAGAAACTACAAAGGCATTCCGGTATATGGGACAAATTGTTCGTCTAATTGTCTCATAA

>Glyma14g08880.2   sequence type=CDS   gene model=Glyma14g08880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGTTAACAGCGAAACCCATTCGACAACTATGCTTCCCACTCCCAATCTCAGTCCCAAACAAGTTCTGCAATTGCAGCTTATCCATAACAGCAACAACCAACACCAACACCAACGCCGAAATTACTACTACTCTCACTCAAACTCCTAAGCCAAAGCCGAACCCTAAGTCGACGTTGAAGAAGCGAAAGAGGTACCGGAAGCTATATCCCGGAGAGACCACCGGCATCACCGAAGAGATGAGGTTCGTCGCCATGAGACTCCGCACCAACGACACCGTTTCTCAACAAGAACACCAATCGCATTCCGACGCGTGGCAGGCCTCCATGGAAGGCTTCCTCTCTTACCTCGTCGACAGCCACCTCATCTTCGCCACCCTCCAACGCATCGTCGACGAATCCGACAACGTTTCCTATGCATACATGAGGAAAACTGGGTTGGAAAGATCAGAAGGGCTGTTGAAGGATCTGAAATGGTTGGAGGAAGAAGGAAATATGATTCCGACTCCTGGTTCTCCAGGGCTTACATATGCCAAATATTTGGAGGAACTCGCAGAGATAAGCGCACCCTTGTTTCTCTCCCATTTCTACAATATCTATTTTTCTCATATAGCTGCTGGTCAGGTCATTGGAAAGAAGGTAGGTACTCACTACTCACTTTCCTTTCCCCTGTACTAG

Predicted protein sequences of Glyma14g08880

Limit To All Plant Sequences

>Glyma14g08880.1   sequence type=predicted peptide   gene model=Glyma14g08880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWLTAKPIRQLCFPLPISVPNKFCNCSLSITATTNTNTNAEITTTLTQTPKPKPNPKSTLKKRKRYRKLYPGETTGITEEMRFVAMRLRTNDTVSQQEHQSHSDAWQASMEGFLSYLVDSHLIFATLQRIVDESDNVSYAYMRKTGLERSEGLLKDLKWLEEEGNMIPTPGSPGLTYAKYLEELAEISAPLFLSHFYNIYFSHIAAGQVIGKKVSEELLEGKELEFYKWEGDVPDLLKDVRDKLNMLSEHWSRDEKNRCLKETTKAFRYMGQIVRLIVS*

>Glyma14g08880.2   sequence type=predicted peptide   gene model=Glyma14g08880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWLTAKPIRQLCFPLPISVPNKFCNCSLSITATTNTNTNAEITTTLTQTPKPKPNPKSTLKKRKRYRKLYPGETTGITEEMRFVAMRLRTNDTVSQQEHQSHSDAWQASMEGFLSYLVDSHLIFATLQRIVDESDNVSYAYMRKTGLERSEGLLKDLKWLEEEGNMIPTPGSPGLTYAKYLEELAEISAPLFLSHFYNIYFSHIAAGQVIGKKVGTHYSLSFPLY*

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