Glyma14g08101 - SoyBase

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Report for Sequence Feature Glyma14g08101

Feature Type:	gene_model
Chromosome:	Gm14
Start:	6123305
stop:	6124447
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g08101

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G39250	AT	Annotation by Michelle Graham. TAIR10: RAD-like 1 \| chr4:18271457-18271857 REVERSE LENGTH=100	SoyBase	E_val: 7.00E-35	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR25040	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR25040:SF164	Panther		JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_Q0PJF9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MYB transcription factor MYB164 (Fragment) n=1 Tax=Glycine max RepID=Q0PJF9_SOYBN	SoyBase	E_val: 7.00E-60	ISS
UniRef100_UPI000233B2A9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B2A9 related cluster n=1 Tax=unknown RepID=UPI000233B2A9	SoyBase	E_val: 3.00E-67	ISS

Expression Patterns of Glyma14g08101

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g08101 not represented in the dataset	Glyma14g08101 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g08101

Paralog	Evidence	Comments
Glyma17g36921	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g08101 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g074500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g08101

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g08101

Limit To All Plant Sequences

>Glyma14g08101.2   sequence type=transcript   gene model=Glyma14g08101   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAGCTCTGATTATTTACATATATAGTGTTGTCTCAATGGCCTCAAGCTCAGCTTGGACAACAAAGCAGAACAAAAAGTTTGAGAATGCTTTGGCCATCTACGACAGGGATACCCCCGATCGGTGGCAGAACTTGGCCAGGGCGGTGGGAGGTAAGACTGTGGAGGAAGTGAAAAGGCACTATGAGATGCTCGTTGATGATTTGAAGCAGATTGAAGAAGGTCACGTGCCCTTGCCCAATTACAGAAATGCTGCTGCAACAGGAGGAGGCAGCATCAGAGGATGAAGGTTCTAAGCCTCCACTGAAGTATATGAAAGAGAGACATGCATATTAGCTCATTACCAGCCAATCAAGCTAAGTGAAGATTAAAATGCATGCTTGATGCACACCTAGCTTGGTTCCATCATTCTATGATAACAAAATCAAGTGTCATTTAATTTTGGTTGGTTTCTTATTTTTCTGTATATGTCTTGTATTGTATCCATGCCGTGTAATCCTTATAAATGTAACAATAATTAAATTAAATTATCTTGAGGACATACCAACCTTTTGATGGTAGAGCATCTAGTTTCTGTCAAGTTCTTTTTAATTTCTCTTTTGGATGAATATAAATGATAAAAAAAGATCTTGTACACCTTCCAAACTAAAACATAGTGAGAGAGAAATGAGCAAAATATTAAAGGCTAAAATATACAAATG

Coding sequences of Glyma14g08101

Limit To All Plant Sequences

>Glyma14g08101.1   sequence type=CDS   gene model=Glyma14g08101   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCAAGCTCAGCTTGGACAACAAAGCAGAACAAAAAGTTTGAGAATGCTTTGGCCATCTACGACAGGGATACCCCCGATCGGTGGCAGAACTTGGCCAGGGCGGTGGGAGGTAAGACTGTGGAGGAAGTGAAAAGGCACTATGAGATGCTCGTTGATGATTTGAAGCAGATTGAAGAAGGTCACGTGCCCTTGCCCAATTACAGAAATGCTGCTGCAACAGGAGGAGGCAGCATCAGAGGTTATAGTTACATGGATGAAGAACAAAGGATGAAGGTTCTAAGCCTCCACTGA

>Glyma14g08101.2   sequence type=CDS   gene model=Glyma14g08101   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCAAGCTCAGCTTGGACAACAAAGCAGAACAAAAAGTTTGAGAATGCTTTGGCCATCTACGACAGGGATACCCCCGATCGGTGGCAGAACTTGGCCAGGGCGGTGGGAGGTAAGACTGTGGAGGAAGTGAAAAGGCACTATGAGATGCTCGTTGATGATTTGAAGCAGATTGAAGAAGGTCACGTGCCCTTGCCCAATTACAGAAATGCTGCTGCAACAGGAGGAGGCAGCATCAGAGGATGA

Predicted protein sequences of Glyma14g08101

Limit To All Plant Sequences

>Glyma14g08101.1   sequence type=predicted peptide   gene model=Glyma14g08101   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSSAWTTKQNKKFENALAIYDRDTPDRWQNLARAVGGKTVEEVKRHYEMLVDDLKQIEEGHVPLPNYRNAAATGGGSIRGYSYMDEEQRMKVLSLH*

>Glyma14g08101.2   sequence type=predicted peptide   gene model=Glyma14g08101   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSSAWTTKQNKKFENALAIYDRDTPDRWQNLARAVGGKTVEEVKRHYEMLVDDLKQIEEGHVPLPNYRNAAATGGGSIRG*

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