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Report for Sequence Feature Glyma14g08080

Feature Type:gene_model
Chromosome:Gm14
Start:6112754
stop:6114980
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g08080
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G19440AT Annotation by Michelle Graham. TAIR10: 3-ketoacyl-CoA synthase 4 | chr1:6729119-6730669 FORWARD LENGTH=516 SoyBaseE_val: 0ISS
GO:0000038GO-bp Annotation by Michelle Graham. GO Biological Process: very long-chain fatty acid metabolic process SoyBaseN/AISS
GO:0006633GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0008610GO-bp Annotation by Michelle Graham. GO Biological Process: lipid biosynthetic process SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0042335GO-bp Annotation by Michelle Graham. GO Biological Process: cuticle development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0016747GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups SoyBaseN/AISS
PF08392PFAM FAE1/Type III polyketide synthase-like protein JGI ISS
PF08541PFAM 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JGI ISS
UniRef100_I1M8B7UniRef Annotation by Michelle Graham. Most informative UniRef hit: 3-ketoacyl-CoA synthase n=1 Tax=Glycine max RepID=I1M8B7_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1M8B7UniRef Annotation by Michelle Graham. Best UniRef hit: 3-ketoacyl-CoA synthase n=1 Tax=Glycine max RepID=I1M8B7_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma14g08080
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g08080
ParalogEvidenceComments
Glyma17g36940 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g08080 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g074300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g08080
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g08080
>Glyma14g08080.1   sequence type=CDS   gene model=Glyma14g08080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAGTGACGATGAGTGGAGAAGAAGAAGCTGCGGTGGGAGTTCAGATCCAACAGAAGAGCAGAATGGTGCTCCCAGATTTCCTCCAGAGCGTGAATCTCAAGTACGTGAAATTAGGTTACCACTACTTGATCTCCAACCTCGTTACCCTATTCCTGGTCCCTTTGATCCTCGTCACGCTAATCCAGGTCTCTCAGACCACCGACCTCCGCCACCTCTGGCTCCACCTCCAGTACAACCTCCTCACCATCCTCACCTGCTCCGCCGTCCTCGTCTTCGGCCTCACCCTCTACGCCGTCACCTGCCCACGCCCCGTCTACCTCCTCGACTCCGCCTGCTTCCGCCCCGCCGACCACCTCAAGGCCCCCTTCCGGAGCTTCATGGATCACTCCCGCCTCACGGGAGACTTCGAGGAGTCCTCCCTGGAGTTCCAGCGGAAGATCCTCGAACGCTCTGGCCTCGGGGAGGAAACCTACGTCCCCGACGCCATGCACTCTATTCCGCCCCAGCCCTCCATGGCCGCTGCCAGGGCCGAGGCGGAACAGGTCATGTTTGGTGCCTTGGACAACCTCTTCCAAAGCACCAACATAAAACCAAAGGATATTGGTATCCTTATTGTGAATTGCAGCTTGTTTAACCCTACCCCCTCACTGTCTTCCATGATTGTTAACAAGTACAAATTAAGGGGTAACATTAGGAGCTTTAATTTGGGAGGGATGGGGTGCAGTGCTGGAGTCATTGCTGTTGATCTTGCTAAGGACCTTTTGCAGGTCCATAGGAACACATATGCTGTGGTTGTTAGCACTGAGAACATTACTCAGAATTGGTACTTTGGGAACAAGAAATCCATGCTCATTCCCAATTGCCTTTTTCGCGTTGGCTGCTCCGTGCTGCTGCTCTCCAACAAGCCGGCGGATCGAAGGAGGGCAAAGTACCGGCTTGTCCATGTTGTGAGGACTCATCGCGGTGCGGACGACAAGGCATTCCGGTGTGTTTACCAGGAGCAGGATGATGCAGGGAAGACTGGTGTTTCCTTGTCTAAGGATTTGATGGCAATTGCTGGTGGAGCATTGAAGACCAACATCACAACACTTGGCCCTTTGGTGCTGCCAATTAGTGAGCAGCTTCTGTTTTTCGTGACTCTGCTGATGAAGAAGTTGTTTAAGGCTGATGTGAAGCCTTACATACCGGATTTCAAGCTTGCTTTTGATCATTTCTGCATCCATGCCGGGGGCAGGGCCGTGATTGATGAGTTGGAGAAGAACCTGCAGCTGCTTCCTGAGCATGTGGAGGCTTCTAGAATGACCCTTCATAGATTTGGGAACACTTCCTCAAGCTCCATTTGGTATGAGTTGGCTTACATTGAAGCCAAAGGGAGGATCAAGAAGGGTAACAGGATTTGGCAAATTGCTTTTGGGAGTGGTTTCAAATGTAACAGTGCGGTTTGGCAGGCTCTGAGAAATGTGAGGCCTTCTCCTAATGGACCATGGGAAGATTGCATTGATAAGTATCCTGTGGAAATAGTCTCATAG
Predicted protein sequences of Glyma14g08080
>Glyma14g08080.1   sequence type=predicted peptide   gene model=Glyma14g08080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTVTMSGEEEAAVGVQIQQKSRMVLPDFLQSVNLKYVKLGYHYLISNLVTLFLVPLILVTLIQVSQTTDLRHLWLHLQYNLLTILTCSAVLVFGLTLYAVTCPRPVYLLDSACFRPADHLKAPFRSFMDHSRLTGDFEESSLEFQRKILERSGLGEETYVPDAMHSIPPQPSMAAARAEAEQVMFGALDNLFQSTNIKPKDIGILIVNCSLFNPTPSLSSMIVNKYKLRGNIRSFNLGGMGCSAGVIAVDLAKDLLQVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGCSVLLLSNKPADRRRAKYRLVHVVRTHRGADDKAFRCVYQEQDDAGKTGVSLSKDLMAIAGGALKTNITTLGPLVLPISEQLLFFVTLLMKKLFKADVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAYIEAKGRIKKGNRIWQIAFGSGFKCNSAVWQALRNVRPSPNGPWEDCIDKYPVEIVS*






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