Glyma14g07900 - SoyBase

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Report for Sequence Feature Glyma14g07900

Feature Type:	gene_model
Chromosome:	Gm14
Start:	5977529
stop:	5978709
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g07900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G75350	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein L31 \| chr1:28272163-28272687 FORWARD LENGTH=144	SoyBase	E_val: 9.00E-51	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0009657	GO-bp	Annotation by Michelle Graham. GO Biological Process: plastid organization	SoyBase	N/A	ISS
GO:0009773	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport in photosystem I	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009902	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast relocation	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0015995	GO-bp	Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0034660	GO-bp	Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process	SoyBase	N/A	ISS
GO:0042254	GO-bp	Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
PF01197	PFAM	Ribosomal protein L31	JGI		ISS
UniRef100_I1M8A1	UniRef	Annotation by Michelle Graham. Best UniRef hit: 50S ribosomal protein L31 n=1 Tax=Glycine max RepID=I1M8A1_SOYBN	SoyBase	E_val: 1.00E-93	ISS
UniRef100_I1M8A1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 50S ribosomal protein L31 n=1 Tax=Glycine max RepID=I1M8A1_SOYBN	SoyBase	E_val: 1.00E-93	ISS

Expression Patterns of Glyma14g07900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g07900 not represented in the dataset	Glyma14g07900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g07900

Paralog	Evidence	Comments
Glyma17g37110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g07900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g072400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g07900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g07900

Limit To All Plant Sequences

>Glyma14g07900.2   sequence type=transcript   gene model=Glyma14g07900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCGAATATAATAGGAATAGTAGAAGGGCCCATTTGGTGACGACCACATATGTACTCCAGAATCTCATCCTTCACCTTCTCCTTCTCCATCCTAAATCGAATAGATAGATAGGTGAAAATGGCGCAGTGTGTGACCAACACATTCGTGCAAGGAAAACCCTTTCTTCCAGTTGCAGCAGCTCCCACTAAAAATGTTCGGAGAGCGGTTCAGTGCGGTGTGTGGTGCAAGAAGAAGGAGATACACCCGCAATTCTACGAGGAATCGAAGGTGTACTGCAACGGGGAGCTGGTGCTGACGACAGGTGGGACCCAGAAGGAATACGTGGTGGACGTGTGGTCGGGGAACCACCCCTTCTACCTCGGAAGCCGGTCGGCGTCTATGGTCAGCGACGACCAGGTCGAGAAGTTCCGCAAGAAGTTCGGGGAGCTCAAAGAGATCATGGAGATTCCTGTTCTCAAGGGAGAGATTGTTATCCCCTCAAGGCGCAAGGGTGTTTCCAAAGGAGGCAAGAAAAAATAATCTATTCTACTCGAACAGGATTGTCTCCCATAGGAAGATATTAAGGTTTCCTTTTTTAATTTCAATTTCTGTAATATTGTAAGACGCTTTAAGCCTGTGCTATGGATATTGTTTCGAGCAAGCCCGTGAATGTGGTAATGTGATTGATTTGGTGATTATGTTCATTTTGAGATTTGCCATTTTTTTCTCCAGTTCATTAGGAGAAAAAGATTCTTATTAGTTCAGAATCCTATCGAAAGATAAGTAAAATAACATATAAATGGGGAAGTACTACCTGAAGACTAATCACTTGTGCTTAATTAGTTGTGTTTAATTACTTGATTTATTTGTTTTTCTTTTTTTAAAAGAGCAGAGCTTTATTTGAAAATGTGTAATTGAAAGCTTCTTAAATTTTTATTTTTGAGGAAATTTCCAAATGATACTGTAATTAGACTTGTCACTTGTGTGATGAGGATAATGGTTAGGTGATATTGTTTGCTATCAGAAGAATATAACAATTCATGGCCTAAATCATATAGTGGACGGCAGATGCAAACCAGAAAAATATTAGATAATCTTCAGCTGAACTGATTTTTAAGTTAGTATTA

Coding sequences of Glyma14g07900

Limit To All Plant Sequences

>Glyma14g07900.1   sequence type=CDS   gene model=Glyma14g07900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCAGTGTGTGACCAACACATTCGTGCAAGGAAAACCCTTTCTTCCAGTTGCAGCAGCTCCCACTAAAAATCAGGTTCGGAGAGCGGTTCAGTGCGGTGTGTGGTGCAAGAAGAAGGAGATACACCCGCAATTCTACGAGGAATCGAAGGTGTACTGCAACGGGGAGCTGGTGCTGACGACAGGTGGGACCCAGAAGGAATACGTGGTGGACGTGTGGTCGGGGAACCACCCCTTCTACCTCGGAAGCCGGTCGGCGTCTATGGTCAGCGACGACCAGGTCGAGAAGTTCCGCAAGAAGTTCGGGGAGCTCAAAGAGATCATGGAGATTCCTGTTCTCAAGGGAGAGATTGTTATCCCCTCAAGGCGCAAGGGTGTTTCCAAAGGAGGCAAGAAAAAATAA

>Glyma14g07900.2   sequence type=CDS   gene model=Glyma14g07900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCAGTGTGTGACCAACACATTCGTGCAAGGAAAACCCTTTCTTCCAGTTGCAGCAGCTCCCACTAAAAATGTTCGGAGAGCGGTTCAGTGCGGTGTGTGGTGCAAGAAGAAGGAGATACACCCGCAATTCTACGAGGAATCGAAGGTGTACTGCAACGGGGAGCTGGTGCTGACGACAGGTGGGACCCAGAAGGAATACGTGGTGGACGTGTGGTCGGGGAACCACCCCTTCTACCTCGGAAGCCGGTCGGCGTCTATGGTCAGCGACGACCAGGTCGAGAAGTTCCGCAAGAAGTTCGGGGAGCTCAAAGAGATCATGGAGATTCCTGTTCTCAAGGGAGAGATTGTTATCCCCTCAAGGCGCAAGGGTGTTTCCAAAGGAGGCAAGAAAAAATAA

Predicted protein sequences of Glyma14g07900

Limit To All Plant Sequences

>Glyma14g07900.1   sequence type=predicted peptide   gene model=Glyma14g07900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQCVTNTFVQGKPFLPVAAAPTKNQVRRAVQCGVWCKKKEIHPQFYEESKVYCNGELVLTTGGTQKEYVVDVWSGNHPFYLGSRSASMVSDDQVEKFRKKFGELKEIMEIPVLKGEIVIPSRRKGVSKGGKKK*

>Glyma14g07900.2   sequence type=predicted peptide   gene model=Glyma14g07900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQCVTNTFVQGKPFLPVAAAPTKNVRRAVQCGVWCKKKEIHPQFYEESKVYCNGELVLTTGGTQKEYVVDVWSGNHPFYLGSRSASMVSDDQVEKFRKKFGELKEIMEIPVLKGEIVIPSRRKGVSKGGKKK*

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