SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G75380 | AT | Annotation by Michelle Graham. TAIR10: bifunctional nuclease in basal defense response 1 | chr1:28281789-28283631 REVERSE LENGTH=325 | SoyBase | E_val: 2.00E-153 | ISS |
| GO:0006289 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide-excision repair | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0004518 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nuclease activity | SoyBase | N/A | ISS |
| PF02577 | PFAM | Uncharacterised ACR, COG1259 | JGI | ISS | |
| UniRef100_C6T8B8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6T8B8_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9FWS6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Bifunctional nuclease 1 n=1 Tax=Arabidopsis thaliana RepID=BBD1_ARATH | SoyBase | E_val: 9.00E-151 | ISS |
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Glyma14g07830 not represented in the dataset |
Glyma14g07830 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g37160 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g071700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g07830.2 sequence type=transcript gene model=Glyma14g07830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTCTGTGCAAGGACCAGTTGTGTGCCCTTCTGTCCGTGCCAAACAAGTAGGGTTCTGCAGCATTCCAATGATTGGGGCAGTGAAAATGAACGTTAGACGCATCCGAAGTGAATTTTGGGGTCTCAATGGCGCCAAGGCTAAACCCGGTTTTCTTTCTTGCCATATAAACACGCGAAAGTGCAAGACTGTGCATTGTACTTTTAACTCACCCTCCAATGACAGTGGAAGTACCGCTGACAATTTCAATGAAAAAGATGAAGATTATGTTATTTCTAGTGTAATTGAAGCTGTTGAGGTGAAGAGTGGAGCAGATGGTTTCATAATCAAAATGAGGGACGGAAGACACTTAAGATGCGTCCATAACAATCCCCAGGGAGGACATCTTCCAGATTATGCACCACATCCTGCTATTGTATTGAAGATGGAAGATGGCACTGGTCTACTTCTCCCTATAATTGTTTTGGAGATGCCAAGTGTTTTGCTAATGGCAGCAATACGCAATGTTCCCATAGCTAGACCTACTTTGTATCAAGTAGTGAAGGAGATGATTGACAAGATGGGTTACGAAGTCAAATTTGTCAGAGTAACCAGGAGAGTTCATGAGGCATACTTTGCTCAGTTATATCTTACCAAGGCATGTACTTTGTACACTTCCTCGCCCCCACCCAAAAAAAAGGCCCCCAAGTGTTGTATTGTTGGAAATGACGCAGAATATGTGAGCTTTGATCTTCGACCTTCAGATGCTATCAATATTGCAGTAAGATGCAAGATTTTACTATTTTACCTGTGCTGTAGGTTCCTATACAAGTCAACAAAGTACTTGGCATACAGTGATGGTATGAGAGTAATTGAATCAGGCAAATTGTCAACACAGTTCCCTGGTATGGATGGCCGACTATTCACTGAAATGGACCGGCCAAGTGGTCAACCTTGTGCCGAGACCACGGAGTTTAATCTTTTACACAATATGTTGAAAGCTGTTGTTGAAGAACGCTATAAAGATGCTGCTTTGTTCAGGGACCAACTTAATCAACTTAGGGCGGGAAAAAACATGAAAAACAGCTGA
>Glyma14g07830.1 sequence type=CDS gene model=Glyma14g07830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTCTGTGCAAGGACCAGTTGTGTGCCCTTCTGTCCGTGCCAAACAAGTAGGGTTCTGCAGCATTCCAATGATTGGGGCAGTGAAAATGAACGTTAGACGCATCCGAAGTGAATTTTGGGGTCTCAATGGCGCCAAGGCTAAACCCGGTTTTCTTTCTTGCCATATAAACACGCGAAAGTGCAAGACTGTGCATTGTACTTTTAACTCACCCTCCAATGACAGTGGAAGTACCGCTGACAATTTCAATGAAAAAGATGAAGATTATGTTATTTCTAGTGTAATTGAAGCTGTTGAGGTGAAGAGTGGAGCAGATGGTTTCATAATCAAAATGAGGGACGGAAGACACTTAAGATGCGTCCATAACAATCCCCAGGGAGGACATCTTCCAGATTATGCACCACATCCTGCTATTGTATTGAAGATGGAAGATGGCACTGGTCTACTTCTCCCTATAATTGTTTTGGAGATGCCAAGTGTTTTGCTAATGGCAGCAATACGCAATGTTCCCATAGCTAGACCTACTTTGTATCAAGTAGTGAAGGAGATGATTGACAAGATGGGTTACGAAGTCAAATTTGTCAGAGTAACCAGGAGAGTTCATGAGGCATACTTTGCTCAGTTATATCTTACCAAGGTTGGAAATGACGCAGAATATGTGAGCTTTGATCTTCGACCTTCAGATGCTATCAATATTGCAGTAAGATGCAAGGTTCCTATACAAGTCAACAAAGTACTTGGCATACAGTGA >Glyma14g07830.2 sequence type=CDS gene model=Glyma14g07830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTCTGTGCAAGGACCAGTTGTGTGCCCTTCTGTCCGTGCCAAACAAGTAGGGTTCTGCAGCATTCCAATGATTGGGGCAGTGAAAATGAACGTTAGACGCATCCGAAGTGAATTTTGGGGTCTCAATGGCGCCAAGGCTAAACCCGGTTTTCTTTCTTGCCATATAAACACGCGAAAGTGCAAGACTGTGCATTGTACTTTTAACTCACCCTCCAATGACAGTGGAAGTACCGCTGACAATTTCAATGAAAAAGATGAAGATTATGTTATTTCTAGTGTAATTGAAGCTGTTGAGGTGAAGAGTGGAGCAGATGGTTTCATAATCAAAATGAGGGACGGAAGACACTTAAGATGCGTCCATAACAATCCCCAGGGAGGACATCTTCCAGATTATGCACCACATCCTGCTATTGTATTGAAGATGGAAGATGGCACTGGTCTACTTCTCCCTATAATTGTTTTGGAGATGCCAAGTGTTTTGCTAATGGCAGCAATACGCAATGTTCCCATAGCTAGACCTACTTTGTATCAAGTAGTGAAGGAGATGATTGACAAGATGGGTTACGAAGTCAAATTTGTCAGAGTAACCAGGAGAGTTCATGAGGCATACTTTGCTCAGTTATATCTTACCAAGGCATGTACTTTGTACACTTCCTCGCCCCCACCCAAAAAAAAGGCCCCCAAGTGTTGTATTGTTGGAAATGACGCAGAATATGTGAGCTTTGATCTTCGACCTTCAGATGCTATCAATATTGCAGTAAGATGCAAGATTTTACTATTTTACCTGTGCTGTAGGTTCCTATACAAGTCAACAAAGTACTTGGCATACAGTGATGGTATGAGAGTAATTGAATCAGGCAAATTGTCAACACAGTTCCCTGGTATGGATGGCCGACTATTCACTGAAATGGACCGGCCAAGTGGTCAACCTTGTGCCGAGACCACGGAGTTTAATCTTTTACACAATATGTTGAAAGCTGTTGTTGAAGAACGCTATAAAGATGCTGCTTTGTTCAGGGACCAACTTAATCAACTTAGGGCGGGAAAAAACATGAAAAACAGCTGA
>Glyma14g07830.1 sequence type=predicted peptide gene model=Glyma14g07830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSVQGPVVCPSVRAKQVGFCSIPMIGAVKMNVRRIRSEFWGLNGAKAKPGFLSCHINTRKCKTVHCTFNSPSNDSGSTADNFNEKDEDYVISSVIEAVEVKSGADGFIIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAIRNVPIARPTLYQVVKEMIDKMGYEVKFVRVTRRVHEAYFAQLYLTKVGNDAEYVSFDLRPSDAINIAVRCKVPIQVNKVLGIQ* >Glyma14g07830.2 sequence type=predicted peptide gene model=Glyma14g07830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSVQGPVVCPSVRAKQVGFCSIPMIGAVKMNVRRIRSEFWGLNGAKAKPGFLSCHINTRKCKTVHCTFNSPSNDSGSTADNFNEKDEDYVISSVIEAVEVKSGADGFIIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAIRNVPIARPTLYQVVKEMIDKMGYEVKFVRVTRRVHEAYFAQLYLTKACTLYTSSPPPKKKAPKCCIVGNDAEYVSFDLRPSDAINIAVRCKILLFYLCCRFLYKSTKYLAYSDGMRVIESGKLSTQFPGMDGRLFTEMDRPSGQPCAETTEFNLLHNMLKAVVEERYKDAALFRDQLNQLRAGKNMKNS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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