SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G28380 | AT | Annotation by Michelle Graham. TAIR10: dsRNA-binding protein 2 | chr2:12134098-12135915 REVERSE LENGTH=434 | SoyBase | E_val: 2.00E-22 | ISS |
| GO:0010267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference | SoyBase | N/A | ISS |
| GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
| GO:0051607 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to virus | SoyBase | N/A | ISS |
| GO:0070919 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of siRNA involved in chromatin silencing by small RNA | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0003725 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: double-stranded RNA binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PF00035 | PFAM | Double-stranded RNA binding motif | JGI | ISS | |
| UniRef100_B9T2K0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Double-stranded RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9T2K0_RICCO | SoyBase | E_val: 1.00E-54 | ISS |
| UniRef100_I1M869 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M869_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma14g07600 not represented in the dataset |
Glyma14g07600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g41350 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g069800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g07600.1 sequence type=CDS gene model=Glyma14g07600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTTGTCTTCTTCTGAGCCTCCTCCACCTTCAGTTCCTGCTCCCGTTCAATCTAACCCTCCTCCACACTTGATGTACAAAAATCGTTTACAAGAGTTTACTTCAAAGTCAGGCATTAACTTTCCTGTGTATCAGACCATTAATGAGGGACAGGATCATAGTCCAAAATTTAGGTCGACTGTGTGGGTCGCTGATATGGGTTACACTTCCCAATCCACATTTTCCCATAAAAAAGCTGCTGAGCATGAGGCAGCTAGACTTGCTTTGGAAAGTATCCTTAAGAGGACCAGAGATGAAGGACTCTCTCTTGTCAATCAGATTTCTCCATTTTCCAAGTCTATCATGAATGAGTACGCTGACAAACTGCATGTAGAACAACCTACATACAACACTGATCAGCAACAGCTAGGAGGGGTGCTTCCTATCTTTATAACTTCTTTAGTTTTCAATGGTACAAGTTACACTGGTGATCCAGCTAGAACAAAAAAGGAAGCTGAGCAGTCAGCCGCAAAGGCTGCAATTCTTTCAATTATGGGTGATTCTAGCTCGGGAACTGTGCTTGTTGAGATTATTAAGTCAAAGTCTATATTTTATGATGCAATCAAAGGAAAGGGACGATCTCTGTCACAGCCTAGTGCAGTGTTATCCACAACAAATGCAGGACAGATCTCTATTACACTGGATCATAAAGATACAGAAGTTGCAGCTTGTGTGGCTGATAATAATAATAATGAGACTAAAGTTGAATTTCCTGAGTTTCCTAAGATGCTTTCCACATGTCAAGAACTCCAAATGATACATCAAGAATCTTCCCTTGAAGCCAATAATGTCTCTTTGCAGCCGGGTTCAGAACATTCCATTGATAATGATTCAACTTCAAAAAAGCGGAAAAAGAACAAGAAGAAGTCTAATAAGAAGTTACGGTCACAGACTCCGCTGTCACCGATTACTGGGGTTCCCTTGAACCAAGTCCCTCCACGTACTGGAGTTCTCATGAACCAAGTTACTCCTTGTTCTACATTTCTCATGAACCAAGTTCCTCCTTGTACTGCTGTTCCCATGAACCAAGTTCCTCCTTGTACTGCAGTTCCCATGAGCCAACTTTATGCTCGTACTTCTCCCATGGACCAAGTCCCTCCTCGTACAGCTCCCATGAACCAAGTTATGCCGTGTACTGCAGCTCCCATGGACCAAGGCCCTCCTCGTACTGCAGCTCCCATGAACCAAGTTCCACCGTGTAGTGCATTTCCCATGATTCAAGTCGCTCCTTGTACTTCAGCTACTGCAGCTCCGATGAACCAAGTTCCCCCTGCAGCTCCGATGAACCAAGTTCCCCCTTGCACTGCAGCTTCCATGAACAAAGTCCCTCTTTTATAG
>Glyma14g07600.1 sequence type=predicted peptide gene model=Glyma14g07600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALSSSEPPPPSVPAPVQSNPPPHLMYKNRLQEFTSKSGINFPVYQTINEGQDHSPKFRSTVWVADMGYTSQSTFSHKKAAEHEAARLALESILKRTRDEGLSLVNQISPFSKSIMNEYADKLHVEQPTYNTDQQQLGGVLPIFITSLVFNGTSYTGDPARTKKEAEQSAAKAAILSIMGDSSSGTVLVEIIKSKSIFYDAIKGKGRSLSQPSAVLSTTNAGQISITLDHKDTEVAACVADNNNNETKVEFPEFPKMLSTCQELQMIHQESSLEANNVSLQPGSEHSIDNDSTSKKRKKNKKKSNKKLRSQTPLSPITGVPLNQVPPRTGVLMNQVTPCSTFLMNQVPPCTAVPMNQVPPCTAVPMSQLYARTSPMDQVPPRTAPMNQVMPCTAAPMDQGPPRTAAPMNQVPPCSAFPMIQVAPCTSATAAPMNQVPPAAPMNQVPPCTAASMNKVPLL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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