SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G12380 | AT | Annotation by Michelle Graham. TAIR10: actin-related protein 5 | chr3:3938309-3941785 REVERSE LENGTH=724 | SoyBase | E_val: 0 | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0007275 | GO-bp | Annotation by Michelle Graham. GO Biological Process: multicellular organismal development | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0030029 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin filament-based process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005654 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleoplasm | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005200 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural constituent of cytoskeleton | SoyBase | N/A | ISS |
| KOG0676 | KOG | Actin and related proteins | JGI | ISS | |
| PTHR11937 | Panther | ACTIN | JGI | ISS | |
| PTHR11937:SF78 | Panther | ATARP5 (ACTIN-RELATED PROTEIN 5) | JGI | ISS | |
| PF00022 | PFAM | Actin | JGI | ISS | |
| UniRef100_B1H3F9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Actr5 protein (Fragment) n=1 Tax=Xenopus (Silurana) tropicalis RepID=B1H3F9_XENTR | SoyBase | E_val: 5.00E-68 | ISS |
| UniRef100_I1M848 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M848_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma14g07340 not represented in the dataset |
Glyma14g07340 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g41610 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g067800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g07340.2 sequence type=CDS gene model=Glyma14g07340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTTTCATTTCCAAAATTCAGCGTCAATCTGATTTCAACCTCTTCGATTCCAACACTCCTCTCGTGATAGACAATGGCGCCTCGTATTTTCGCATAGGGTGGGCGGGAGAGTCTGAACCTCGTGTTGTTTTTCGCCACATTGTGCAAAGGCCGTGCCATAAAGAAACCGGGGAAACTGTCACTATTGTGGGTGACCATGATCCGGCATTTCTGAAATACTTTGACTGCACTCACTCAGGGCCACACTCTGCATTTGATAGCAATGTTGTGTACCAGTTTGAAACAATGCAATATATTCTAGATTTTGGATTTGATCGGATGGGTGCAAATGGAACAGAGATTGATCATCCTGTCCTGATCACAGAATGTGTATGCAACCCGGTTCAATCTCGTAGTAAAATGGCAGAACTTCTTTTTGAGACTTATGGAGTTCCATCAATTGCCTTTGGTGTTGATGTGGCATTCAGCTATAAATATAATCAACAGCGAGGAGTTTGTGCTAAAGATTGTCTTGCTTTGTGTCCTGGATTCAACACAACCCATGTGATTCCGTTTGTAGATGGGGAGCCTGTTTACGAAGGATGCTGTCGTACTAATATTGGTGGATTCCATGTGACTGATCATTTGAAGCAACTCCTTTCACTTAAATATCCTTATCATTTGGCTAGATTTACATGGGAAAAGGTTGAAGACCTGAAGATGGAACATTGTTACATTGCACCAGATTATGTTTCTGAAGCTCGGTTGTTTCAGAAAGGAGCCAAGGAAGCTGAAGAAAAAACCAGATATTGGCAGATTCCTTGGGTTCCACCCCCAATTGAGGAGCCTCCTTCCGAGGAAGAGATTGCAAGAAAGGCAGCAATAAAAGAGAAACAAGGTCAAAGTCTTCGAGAAATGGCTGAGGCAAAGAGGTCTTCTGAGATAAATGAACTGGAAAATGAATTGCATGGTTTAGAGTTTCTTTGGCATCAGCTTGAACAAGTGGAAGAGAGCAAGGTTCCATCTTTCCTGGCAGAAACTGGCTATGGCTCTAGGCAGGAGATTGAATCTGCACGTAATATAGTTATGCAATCTTTACAGAAAGCAAAAGGTGAACCAAAGAATGAACAAGATGCAACTGAAAAGGTTGATCCTGCCACCAATGATTCTCTTATTAACATTCCTGATGAGGTGCCACATGCTCGACCTCTGACCAAAGAAGATTTTCAGATTGTTCTTGGGGTCGAAAGGTTCCGATGTCCTGAACTATTGTTTAATCCAAACTGGATTGCGGTTGATCAGGTAGGATTAGATGAGATGGTTGGGGTTTCAATAAGGAGGTTGCCATACAAGGATGAAAGCTTGGAAGAGAGACTGACTAGTTCCATACTTGTTACTGGTGGAAGTTCTCTTTTCCCCGGTATAATTGAACGCCTGGAAGTTGGAATTCGGATGATTAGACCTTGTGGCACACCTATAAAAATAGTTAGAGCACTGGATCCAGTAATGGATGCATGGAGAGGGGCTGCTTCATTTGCCTCGGACCCACAGTTCCATCAGCAAACTTTTAGTATACTGGATTATCATGAAAAAGGAGAAGACTGGCTTCGCAATTATCAACTGCAGTATACTTTGTAA
>Glyma14g07340.2 sequence type=predicted peptide gene model=Glyma14g07340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPFISKIQRQSDFNLFDSNTPLVIDNGASYFRIGWAGESEPRVVFRHIVQRPCHKETGETVTIVGDHDPAFLKYFDCTHSGPHSAFDSNVVYQFETMQYILDFGFDRMGANGTEIDHPVLITECVCNPVQSRSKMAELLFETYGVPSIAFGVDVAFSYKYNQQRGVCAKDCLALCPGFNTTHVIPFVDGEPVYEGCCRTNIGGFHVTDHLKQLLSLKYPYHLARFTWEKVEDLKMEHCYIAPDYVSEARLFQKGAKEAEEKTRYWQIPWVPPPIEEPPSEEEIARKAAIKEKQGQSLREMAEAKRSSEINELENELHGLEFLWHQLEQVEESKVPSFLAETGYGSRQEIESARNIVMQSLQKAKGEPKNEQDATEKVDPATNDSLINIPDEVPHARPLTKEDFQIVLGVERFRCPELLFNPNWIAVDQVGLDEMVGVSIRRLPYKDESLEERLTSSILVTGGSSLFPGIIERLEVGIRMIRPCGTPIKIVRALDPVMDAWRGAASFASDPQFHQQTFSILDYHEKGEDWLRNYQLQYTL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
