Glyma14g07280 - SoyBase

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Report for Sequence Feature Glyma14g07280

Feature Type:	gene_model
Chromosome:	Gm14
Start:	5442332
stop:	5445269
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g07280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G75250	AT	Annotation by Michelle Graham. TAIR10: RAD-like 6 \| chr1:28244463-28245453 REVERSE LENGTH=97	SoyBase	E_val: 2.00E-32	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR25040	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR25040:SF162	Panther		JGI		ISS
UniRef100_G7J732	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DnaJ homolog subfamily C member n=1 Tax=Medicago truncatula RepID=G7J732_MEDTR	SoyBase	E_val: 3.00E-33	ISS
UniRef100_UPI0002337932	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337932 related cluster n=1 Tax=unknown RepID=UPI0002337932	SoyBase	E_val: 3.00E-59	ISS

Expression Patterns of Glyma14g07280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g07280 not represented in the dataset	Glyma14g07280 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g07280

Paralog	Evidence	Comments
Glyma02g41671	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g07280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g067100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g07280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g07280

Limit To All Plant Sequences

>Glyma14g07280.2   sequence type=CDS   gene model=Glyma14g07280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAAACTCACACAACAATAACAAGGAAAATTCTTCTTCTTGGACACGCATGCAGAACAAGCAATTCGAAAGCGCACTTGCCTTGTATGATCAAGACACCCCAGATCGATGGCAAAACATAGCAAAAGTGGTTGGTGATAAATCGGCTGAGGAAGTGAAGAGACACTATGAAATCCTTTTGGAGGACCTTAGCCATATAGAGTCTGGACGTGTTCCAATTCCCAGCTATAAGTCCACAGATAACAATGAAGAGAGGCCTCTCAAGTATCTTAATCAGCATTGA

Predicted protein sequences of Glyma14g07280

Limit To All Plant Sequences

>Glyma14g07280.2   sequence type=predicted peptide   gene model=Glyma14g07280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASNSHNNNKENSSSWTRMQNKQFESALALYDQDTPDRWQNIAKVVGDKSAEEVKRHYEILLEDLSHIESGRVPIPSYKSTDNNEERPLKYLNQH*

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