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Report for Sequence Feature Glyma14g07140

Feature Type:gene_model
Chromosome:Gm14
Start:5292956
stop:5297197
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g07140
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G56740AT Annotation by Michelle Graham. TAIR10: histone acetyltransferase of the GNAT family 2 | chr5:22953009-22955577 REVERSE LENGTH=467 SoyBaseE_val: 0ISS
GO:0006261GO-bp Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication SoyBaseN/AISS
GO:0006348GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing at telomere SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0016570GO-bp Annotation by Michelle Graham. GO Biological Process: histone modification SoyBaseN/AISS
GO:0016573GO-bp Annotation by Michelle Graham. GO Biological Process: histone acetylation SoyBaseN/AISS
GO:0048449GO-bp Annotation by Michelle Graham. GO Biological Process: floral organ formation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0004402GO-mf Annotation by Michelle Graham. GO Molecular Function: histone acetyltransferase activity SoyBaseN/AISS
GO:0008080GO-mf Annotation by Michelle Graham. GO Molecular Function: N-acetyltransferase activity SoyBaseN/AISS
GO:0010485GO-mf Annotation by Michelle Graham. GO Molecular Function: H4 histone acetyltransferase activity SoyBaseN/AISS
KOG2696 KOG Histone acetyltransferase type b catalytic subunit JGI ISS
PTHR12046Panther HISTONE ACETYLTRANSFERASE TYPE B CATALYTIC SUBUNIT JGI ISS
PF01853PFAM MOZ/SAS family JGI ISS
PF10394PFAM Histone acetyl transferase HAT1 N-terminus JGI ISS
UniRef100_G7KGV7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Histone acetyltransferase type B catalytic subunit n=1 Tax=Medicago truncatula RepID=G7KGV7_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1M828UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M828_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma14g07140
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g07140
ParalogEvidenceComments
Glyma02g41830 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g07140 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g065800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g07140
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g07140
>Glyma14g07140.1   sequence type=CDS   gene model=Glyma14g07140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGCAGAAGCAGCGTTCGAGTTCCGATGCCGACAACGAAGTCAAGAAACGACGCCGTGTTGGTTTCTCAGGCGTTGATTCTGGAGTTGAGGCCAAAGACTGCATCACAATCTATCTAGTTTCAAGCAAGGAAGAATTCGATGCTCCAGAGAGTTTTGTCATTCATCCTGTGGATCTGAATAGCTTTTTTGATGATGATGGGAAAATTTATGGCTATGAGGGTTTGAAGATTACCATCTGGGTTAGCAGCATATCATTTTATGCATATGCTGATATTACATTCCAGAGTTCATCTGATCGAGGCAAAGGGGTCACAGATTTGAAATCTGCTCTTCAGACAATTTTTGCTGAGACTCTTGTTGATAGCAAGGATGAATTCCTTCAGAAATATTTGGTGGATAACGACTTTGTTAGAACAAACATCTCAAATGGAGAAGCTTTGAAGCACAAAGCTTTCCAGGGGAACATTTCTGATTATAATCCACATACAGATTCATCTACTTCTACTGTTGAGGTTGTCCGTTTGGTGGCAGGCAACATGACTACTGGACAACTTTACAGTCATCTAATACCCCTCACACTACTTCTCGTTGATGGTAGCAGTCCTATTGATGTTACTGATTCACAGTGGGAGCTGTATGTTTTGTGTCAGAAGAAAACTGATCCGCAGGGAGAGATCCAATGTAGGTTGATTGGTTTTACTGCTGTTTATCGATTTTATCACTATCCTGATGATTCCCGATTACGACTAAGCCAGATACTGGTATTACCTCCTTACCAGCACAAGGGTTATGGTCGATTCCTTCTAGAGGTGCTATATGATGTTGCTATATCTGAAAATGTTTTTGACTTCACGGTAGAAGAGCCATTAGATCACTTCCAACATGTTCGTACTTGTGTTGACTCACTTCGCCTGCTTCAGTTTTACCCAATTCAGAATATAGTTACTAAAGCTGTTTCACTTCTGAAGCAAGGAAAGTTATCAAAGAAAGCAAATTGTCCTCGACTTTTGCCACCTCCCAGCGCAATTGAGGATGTTAGGAAAAGTCTGAAAATTAACAAGCAGCAGTTTCTCCAGTGTTGGGAGGTTTTGATCTACATTGGCCTTAATCCTGTTGACAAGAACACGGAGAACTTTGTTAGTATTATTTTGAACCGTGTTAAGTATGATATCTTAGGGAAAGATTCTGGGACGTCTGGGAAGCAGCTTATTGAAGTACCAAGTGATGTTGATCAGGAGATGTCATTTGTCATGTTCAGATCAGAAGCCAACGAAGCTAGTAGTGTGCAAATGGATGACAATCAGGCTAATCAAGAAGAGCAACTCCAGAGGTTAGTTCAGGAAAGGGTGAAAGAAATTCAGTTGATTGCGGAAAAGGTAACCCTGCATCTTGGGAGCTCAGGGGTGGTGGTTAATTAG
Predicted protein sequences of Glyma14g07140
>Glyma14g07140.1   sequence type=predicted peptide   gene model=Glyma14g07140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGQKQRSSSDADNEVKKRRRVGFSGVDSGVEAKDCITIYLVSSKEEFDAPESFVIHPVDLNSFFDDDGKIYGYEGLKITIWVSSISFYAYADITFQSSSDRGKGVTDLKSALQTIFAETLVDSKDEFLQKYLVDNDFVRTNISNGEALKHKAFQGNISDYNPHTDSSTSTVEVVRLVAGNMTTGQLYSHLIPLTLLLVDGSSPIDVTDSQWELYVLCQKKTDPQGEIQCRLIGFTAVYRFYHYPDDSRLRLSQILVLPPYQHKGYGRFLLEVLYDVAISENVFDFTVEEPLDHFQHVRTCVDSLRLLQFYPIQNIVTKAVSLLKQGKLSKKANCPRLLPPPSAIEDVRKSLKINKQQFLQCWEVLIYIGLNPVDKNTENFVSIILNRVKYDILGKDSGTSGKQLIEVPSDVDQEMSFVMFRSEANEASSVQMDDNQANQEEQLQRLVQERVKEIQLIAEKVTLHLGSSGVVVN*






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