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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G39830 | AT | Annotation by Michelle Graham. TAIR10: DA1-related protein 2 | chr2:16619950-16623658 REVERSE LENGTH=528 | SoyBase | E_val: 0 | ISS |
| GO:0010088 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phloem development | SoyBase | N/A | ISS |
| GO:0048364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root development | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG1703 | KOG | Adaptor protein Enigma and related PDZ-LIM proteins | JGI | ISS | |
| PTHR24209 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24209:SF106 | Panther | JGI | ISS | ||
| PF00412 | PFAM | LIM domain | JGI | ISS | |
| PF12315 | PFAM | Protein of unknown function (DUF3633) | JGI | ISS | |
| UniRef100_G7K212 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: LIM and UIM domain-containing n=1 Tax=Medicago truncatula RepID=G7K212_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233B134 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B134 related cluster n=1 Tax=unknown RepID=UPI000233B134 | SoyBase | E_val: 0 | ISS |
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Glyma14g07060 not represented in the dataset |
Glyma14g07060 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g41920 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g065000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g07060.3 sequence type=transcript gene model=Glyma14g07060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGAAAATTTTGCATACACACTCTCTAACTTGAGTTGAGCTTCAACTCCATGCGTGCAAACACAGCACTTGTTTCTTTTTCTGCTTTTCTCTCTCTAAATCCTCTTTGATTCTCTCTCTCCAATCCACCCCTTACTTAATATTCTCCTCTTGAGCAGATTCCCTCCTCGCCCACCCCACAACCCATCTTTCTGCCTTTCTCTCTTCATTGCTTTCCAAGCCAAGAATCTCTTTTGATTCCTCTCTTCCTCTCCTTTTCAACCACTATTAACTCTTCTCCAATCCCCCTTCTTCTCCACCTCTCTGTCACTTTCATTCCTCTTCCTCCTTTTTCCCTTCTCTCTCACACAACATTATTGCCTTTTCATTCTTATGGCTCCTTCTTCAGATGTTAACCATCTTTCACATCCTTGTATCTATGGGGATTATAGTTCTTCTCGCTCAGAAAGAAAGTCTGGTTTCATGAAATGGCTTAATAAGCTTTTCAGAGGTGGGCCCAATAGAGGAAGGGGTGGTCGCCACCTGCATGAGCCAGCAGAGGAAAGCAGAGTTTGGGGTGCTCCATCTAGAGCGTTGGATGATCGTGCTAGAGCTCAGAAGGAGAAAGAGGATCTAGGCCATGCAATGGCACTTTCTTCAGCCGAAGATTTAAAGAGACCAAACGGATATAATTGGGGAGAAGACACTGGTGATGATTACTCGAAGGCACCTCGTGATACCCTTAACTCATCTGCACACCCTCCCTTTGCCCCTACACCATTTTATCCCCACGAATATAGAAGAATATGTGGTGGCTGCAACCAAGAGATAATGTATGGAAATTGTTTGGGCTGCATGGATACTTATTTTCACCCAAATTGTTTTCGCTGTCACTCTTGTGGTTACCCCATTACAGAGCGTGAGTTTTCCTTGTCAGGGAAGCATCCATATCACAAGTCATGTTTTAAAGAGTTGAATCATCCAAAATGTGAAGTTTGCTTCCAATTTATTCCTATAAATGCTGCTGGTTTGATTGAGTATAGGTGCCACCCCTTTTGGTCCCAAAAGTATTGTCCATCTCATGAATATGATAATACAGCTCGCTGCTGTAGTTGTGAAAGATTGGAGCCTTTGAACATAAAATACTATAGACTAGAAGATGGACGGAGTTTGTGTTTAGAGTGCATGGAATCTGCTATAATGGATACCGGTGATTGCCAGCCCCTTTACCATTCTATCAGAGATTACTATGAAGGAATGCAGATGAGAATAGATCAACAAATTCCCATGCTTCTAGTTGAGAGAGAAGCACTTAATGAAGCTATTGTAGGGGAGAAAAATGGTTTTCATCACTTACCAGAAACAAGAGGCTTATGCCTTTCAGAAGAGCAGACTGTCACCAGTATACATAGAAGACCAAGAATTGGAGGCCATCGACTAATCGGGATGCGAACTCAACCTCAAAAACTGACTAGAAAATGTGAAGTTACAGCAATTCTTGTTCTATATGGTCTTCCTAGGTTACTCACAGGTGCTATACTTGCCCATGAGTTGATGCATGCATGGCTACGCCTTAATGGTTATCGCAACCTTAATCCTGAAGTAGAGGAAGGCATTTGTCAGGTTCTTTCGTATATGTGGCTTGAGTCAGAAGTAATGCCTAGCTTTCAAAACATGCCATCAACATCCACAAGTGCTGCCTCTTCCTACTCCTCCTCAAAGAAGGGTGCAAAGTCTCATGTTGAAAATAAATTGGGTGAATTTTTCAAGAATCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGTGGCTTTAGAGCTGCTAATGAAGCTGTTAATAGATATGGTTTGCGTAGAACACTTGACCATATTCATTGGACTGGTTTTTTCCCAGTGTAATAAGTATGGATAGAAGTGCTTTGTTTTCATTTTCTTTGGTTCTACAAGTGGATGGACCAGGACCAATTCAAAGTAAAGACAGAAGCTTGGACAACTTCTGATATTTGGGTCCTACGAGGAAGTCCAAGTCTAATTTGACCAAAAAATAAATAAATGCATGACAAGTTCGTATTCAACAACTGTTTATTTCCCTTGACCCCAAAATAAGGAACTGTTATTTCTTTATGCATTTAGCAATTATTTTAGTAAATCAATATGGCTTTTGTAAATATTGTAAAAAAGCATCCCTCCCTCACCAATTAAAATTTCAACTTAATAGCAAATGAG
>Glyma14g07060.2 sequence type=CDS gene model=Glyma14g07060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCCTTCTTCAGATGTTAACCATCTTTCACATCCTTGTATCTATGGGGATTATAGTTCTTCTCGCTCAGAAAGAAAGTCTGGTTTCATGAAATGGCTTAATAAGCTTTTCAGAGGTGGGCCCAATAGAGGAAGGGGTGGTCGCCACCTGCATGAGCCAGCAGAGGAAAGCAGAGTTTGGGGTGCTCCATCTAGAGCGTTGGATGATCGTGCTAGAGCTCAGAAGGAGAAAGAGGATCTAGGCCATGCAATGGCACTTTCTTCAGCCGAAGATTTAAAGAGACCAAACGCTCATCAAGGATATAATTGGGGAGAAGACACTGGTGATGATTACTCGAAGGCACCTCGTGATACCCTTAACTCATCTGCACACCCTCCCTTTGCCCCTACACCATTTTATCCCCACGAATATAGAAGAATATGTGGTGGCTGCAACCAAGAGATAATGTATGGAAATTGTTTGGGCTGCATGGATACTTATTTTCACCCAAATTGTTTTCGCTGTCACTCTTGTGGTTACCCCATTACAGAGCGTGAGTTTTCCTTGTCAGGGAAGCATCCATATCACAAGTCATGTTTTAAAGAGTTGAATCATCCAAAATGTGAAGTTTGCTTCCAATTTATTCCTATAAATGCTGCTGGTTTGATTGAGTATAGGTGCCACCCCTTTTGGTCCCAAAAGTATTGTCCATCTCATGAATATGATAATACAGCTCGCTGCTGTAGTTGTGAAAGATTGGAGCCTTTGAACATAAAATACTATAGACTAGAAGATGGACGGAGTTTGTGTTTAGAGTGCATGGAATCTGCTATAATGGATACCGGTGATTGCCAGCCCCTTTACCATTCTATCAGAGATTACTATGAAGGAATGCAGATGAGAATAGATCAACAAATTCCCATGCTTCTAGTTGAGAGAGAAGCACTTAATGAAGCTATTGTAGGGGAGAAAAATGGTTTTCATCACTTACCAGAAACAAGAGGCTTATGCCTTTCAGAAGAGCAGACTGTCACCAGTATACATAGAAGACCAAGAATTGGAGGCCATCGACTAATCGGGATGCGAACTCAACCTCAAAAACTGACTAGAAAATGTGAAGTTACAGCAATTCTTGTTCTATATGGTCTTCCTAGGTTACTCACAGGTGCTATACTTGCCCATGAGTTGATGCATGCATGGCTACGCCTTAATGGTTATCGCAACCTTAATCCTGAAGTAGAGGAAGGCATTTGTCAGGTTCTTTCGTATATGTGGCTTGAGTCAGAAGTAATGCCTAGCTTTCAAAACATGCCATCAACATCCACAAGTGCTGCCTCTTCCTACTCCTCCTCAAAGAAGGGTGCAAAGTCTCATGTTGAAAATAAATTGGGTGAATTTTTCAAGAATCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGTGGCTTTAGAGCTGCTAATGAAGCTGTTAATAGATATGGTTTGCGTAGAACACTTGACCATATTCATTGGACTGGTTTTTTCCCAGTGTAA >Glyma14g07060.3 sequence type=CDS gene model=Glyma14g07060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCCTTCTTCAGATGTTAACCATCTTTCACATCCTTGTATCTATGGGGATTATAGTTCTTCTCGCTCAGAAAGAAAGTCTGGTTTCATGAAATGGCTTAATAAGCTTTTCAGAGGTGGGCCCAATAGAGGAAGGGGTGGTCGCCACCTGCATGAGCCAGCAGAGGAAAGCAGAGTTTGGGGTGCTCCATCTAGAGCGTTGGATGATCGTGCTAGAGCTCAGAAGGAGAAAGAGGATCTAGGCCATGCAATGGCACTTTCTTCAGCCGAAGATTTAAAGAGACCAAACGGATATAATTGGGGAGAAGACACTGGTGATGATTACTCGAAGGCACCTCGTGATACCCTTAACTCATCTGCACACCCTCCCTTTGCCCCTACACCATTTTATCCCCACGAATATAGAAGAATATGTGGTGGCTGCAACCAAGAGATAATGTATGGAAATTGTTTGGGCTGCATGGATACTTATTTTCACCCAAATTGTTTTCGCTGTCACTCTTGTGGTTACCCCATTACAGAGCGTGAGTTTTCCTTGTCAGGGAAGCATCCATATCACAAGTCATGTTTTAAAGAGTTGAATCATCCAAAATGTGAAGTTTGCTTCCAATTTATTCCTATAAATGCTGCTGGTTTGATTGAGTATAGGTGCCACCCCTTTTGGTCCCAAAAGTATTGTCCATCTCATGAATATGATAATACAGCTCGCTGCTGTAGTTGTGAAAGATTGGAGCCTTTGAACATAAAATACTATAGACTAGAAGATGGACGGAGTTTGTGTTTAGAGTGCATGGAATCTGCTATAATGGATACCGGTGATTGCCAGCCCCTTTACCATTCTATCAGAGATTACTATGAAGGAATGCAGATGAGAATAGATCAACAAATTCCCATGCTTCTAGTTGAGAGAGAAGCACTTAATGAAGCTATTGTAGGGGAGAAAAATGGTTTTCATCACTTACCAGAAACAAGAGGCTTATGCCTTTCAGAAGAGCAGACTGTCACCAGTATACATAGAAGACCAAGAATTGGAGGCCATCGACTAATCGGGATGCGAACTCAACCTCAAAAACTGACTAGAAAATGTGAAGTTACAGCAATTCTTGTTCTATATGGTCTTCCTAGGTTACTCACAGGTGCTATACTTGCCCATGAGTTGATGCATGCATGGCTACGCCTTAATGGTTATCGCAACCTTAATCCTGAAGTAGAGGAAGGCATTTGTCAGGTTCTTTCGTATATGTGGCTTGAGTCAGAAGTAATGCCTAGCTTTCAAAACATGCCATCAACATCCACAAGTGCTGCCTCTTCCTACTCCTCCTCAAAGAAGGGTGCAAAGTCTCATGTTGAAAATAAATTGGGTGAATTTTTCAAGAATCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGTGGCTTTAGAGCTGCTAATGAAGCTGTTAATAGATATGGTTTGCGTAGAACACTTGACCATATTCATTGGACTGGTTTTTTCCCAGTGTAA
>Glyma14g07060.2 sequence type=predicted peptide gene model=Glyma14g07060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPSSDVNHLSHPCIYGDYSSSRSERKSGFMKWLNKLFRGGPNRGRGGRHLHEPAEESRVWGAPSRALDDRARAQKEKEDLGHAMALSSAEDLKRPNAHQGYNWGEDTGDDYSKAPRDTLNSSAHPPFAPTPFYPHEYRRICGGCNQEIMYGNCLGCMDTYFHPNCFRCHSCGYPITEREFSLSGKHPYHKSCFKELNHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDNTARCCSCERLEPLNIKYYRLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMQMRIDQQIPMLLVEREALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSIHRRPRIGGHRLIGMRTQPQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLNGYRNLNPEVEEGICQVLSYMWLESEVMPSFQNMPSTSTSAASSYSSSKKGAKSHVENKLGEFFKNQIANDSSPAYGGGFRAANEAVNRYGLRRTLDHIHWTGFFPV* >Glyma14g07060.3 sequence type=predicted peptide gene model=Glyma14g07060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPSSDVNHLSHPCIYGDYSSSRSERKSGFMKWLNKLFRGGPNRGRGGRHLHEPAEESRVWGAPSRALDDRARAQKEKEDLGHAMALSSAEDLKRPNGYNWGEDTGDDYSKAPRDTLNSSAHPPFAPTPFYPHEYRRICGGCNQEIMYGNCLGCMDTYFHPNCFRCHSCGYPITEREFSLSGKHPYHKSCFKELNHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDNTARCCSCERLEPLNIKYYRLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMQMRIDQQIPMLLVEREALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSIHRRPRIGGHRLIGMRTQPQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLNGYRNLNPEVEEGICQVLSYMWLESEVMPSFQNMPSTSTSAASSYSSSKKGAKSHVENKLGEFFKNQIANDSSPAYGGGFRAANEAVNRYGLRRTLDHIHWTGFFPV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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