Glyma14g06820 - SoyBase

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Report for Sequence Feature Glyma14g06820

Feature Type:	gene_model
Chromosome:	Gm14
Start:	5026309
stop:	5029234
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g06820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G07070	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein L35Ae family protein \| chr1:2168652-2169703 FORWARD LENGTH=112	SoyBase	E_val: 3.00E-62	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0042254	GO-bp	Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0022625	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG0887	KOG	60S ribosomal protein L35A/L37	JGI		ISS
PTHR10902	Panther	60S RIBOSOMAL PROTEIN L35A	JGI		ISS
PF01247	PFAM	Ribosomal protein L35Ae	JGI		ISS
UniRef100_B9SPF5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L35a, putative n=1 Tax=Ricinus communis RepID=B9SPF5_RICCO	SoyBase	E_val: 3.00E-63	ISS
UniRef100_I1JI46	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JI46_SOYBN	SoyBase	E_val: 5.00E-71	ISS

Expression Patterns of Glyma14g06820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g06820 not represented in the dataset	Glyma14g06820 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g06820

Paralog	Evidence	Comments
Glyma02g42081	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g06820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g062900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g06820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g06820

Limit To All Plant Sequences

>Glyma14g06820.3   sequence type=transcript   gene model=Glyma14g06820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAGTTCGCTCCGTTTGACTATGTCTATAAGAACCCCGAAACTGATGCAATTGTTGCCACTGCTTCCGCCGAGCTTAGGAGAATAGAAGAGGAGCAGGAGGCATCACCATTGCCACAATGGTTAAAGGTCGCCAAGGAGAACGTGTAAGACTCTACGTCAGGGGTTCAATTCTTGGATACAAGAGGTCCAAGTCAAATCAATACCCAAGCACCTCCCTAATCCAGATTGAGAATGTAAACTCTAAGGAAGAAGTTGCGTGGTACTGTGGGAAGCGCATGGCTTACATCTACAAAGCGAAGGTAAAGAAGAACGGAAGCCACTATCGCTGCATTTGGGGTAAGGTCACCAGGCCTCATGGTAACAGTGGTATAGTTCGAGCTAAGTTCAAGTCCAATCTGCCACCTAGGTCAATGGGTGCAAGGGTTAGAGTATTCATGTATCCAAGCAATATATGAGATTCTCAGGATTCGTGTGTCGTGGGGCTAGTTTGTCAGAGTATTTGAAAGGAATTTGCATTTTGCGAGTTAAATTTGTGTTTTTCTTTTTTGGTAGCTCTTGAGCAGAATAGTATCTTTGTTTAGGATGGAGAATGAACCCCGTGTTTTTCTTTATTCTCACTGCCATGGTTATTAAGGAGGATTGAGTCTCAATTTTATAAACGGATTTTTCTCCTCACTTGTTGCATTTTCCCGTCCCCTTAAAATTGGAATTGAAGAATTCGAGCTCGCTGTTCTCGGGATAAAAAAATTGGAACTTTTCATCTCCATCTTAAGGAAATGTCTATTGGATTAATTATTATTGGAATGAAGTTAAAGGGATTAAATTGTGATCTCCCGGAAAAGTCAATCGTGTATGGTATATAAAATTTGTGATGAGCGTTTAGAGGGAACTGAAAACACTGTTTTGAGTACATGTTTTTTTTTTATATATAAATGACTTTTTGCACTGC

>Glyma14g06820.5   sequence type=transcript   gene model=Glyma14g06820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGAATAGAAGAGGAGCAGGAGGCATCACCATTGCCACAATGGTTAAAGGTCGCCAAGGAGAACGTACTCTACGTCAGGGGTTCAATTCTTGGATACAAGAGGTCCAAGTCAAATCAATACCCAAGCACCTCCCTAATCCAGATTGAGAATGTAAACTCTAAGGAAGAAGTTGCGTGGTACTGTGGGAAGCGCATGGCTTACATCTACAAAGCGAAGGTAAAGAAGAACGGAAGCCACTATCGCTGCATTTGGGGTAAGGTCACCAGGCCTCATGGTAACAGTGGTATAGTTCGAGCTAAGTTCAAGTCCAATCTGCCACCTAGGTCAATGGGTGCAAGGGTTAGAGTATTCATGTATCCAAGCAATATATGAGATTCTCAGGATTCGTGTGTCGTGGGGCTAGTTTGTCAGAGTATTTGAAAGGAATTTGCATTTTGCGAGTTAAATTTGTGTTTTTCTTTTTTGGTAGCTCTTGAGCAGAATAGTATCTTTGTTTAGGATGGAGAATGAACCCCGTGTTTTTCTTTATTCTCACTGCCATGGTTATTAAGGAGGATTGAGTCTCAATTTTATAAACGGATTTTTCTCCTCACTTGTTGCATTTTCCCGTCCCCTTAAAATTGGAATTGAAGAATTCGAGCTCGCTGTTCTCGGGATAAAAAAATTGGAACTTTTCATCTCCATCTTAAGGAAATGTCTATTGGATTAATTATTATTGGAATGAAGTTAAAGGGATTAAATTGTGATCTCCCGGAAAAGTCAATCGTGTATGGTATATAAAATTTGTGATGAGCGTTTAGAGGGAACTGAAAACACTGTTTTGAGTACATGTTTTTTTTTTATATATAAATGACTTTTTGCACTGC

>Glyma14g06820.6   sequence type=transcript   gene model=Glyma14g06820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCCGCCGAGCTTAGGAGAATAGAAGAGGAGCAGGAGGCATCACCATTGCCACAATGGTTAAAGGTCGCCAAGGAGAACGTGTAAGACTCTACGTCAGGGGTTCAATTCTTGGATACAAGAGGTCCAAGTCAAATCAATACCCAAGCACCTCCCTAATCCAGATTGAGAATGTAAACTCTAAGGAAGAAGTTGCGTGGTACTGTGGGAAGCGCATGGCTTACATCTACAAAGCGAAGGTAAAGAAGAACGGAAGCCACTATCGCTGCATTTGGGGTAAGGTCACCAGGCCTCATGGTAACAGTGGTATAGTTCGAGCTAAGTTCAAGTCCAATCTGCCACCTAGGTCAATGGGTGCAAGGGTTAGAGTATTCATGTATCCAAGCAATATATGAGATATTAAGTGTAAAACCTTTCTGCTTGAGCCTACTCCTTTATCCGTGGAGATATGCTCCAATATTCTCAGGATTCGTGTGTCGTGGGGCTAGTTTGTCAGAGTATTTGAAAGGAATTTGCATTTTGCGAGTTAAATTTGTGTTTTTCTTTTTTGGTAGCTCTTGAGCAGAATAGTATCTTTGTTTAGGATGGAGAATGAACCCCGTGTTTTTCTTTATTCTCACTGCCATGGTTATTAAGGAGGATTGAGTCTCAATTTTATAAACGGATTTTTCTCCTCACTTGTTGCATTTTCCCGTCCCCTTAAAATTGGAATTGAAGAATTCGAGCTCGCTGTTCTCGGGATAAAAAAATTGGAACTTTTCATCTCCATCTTAAGGAAATGTCTATTGGATTAATTATTATTGGAATGAAGTTAAAGGGATTAAATTGTGATCTCCCGGAAAAGTCAATCGTGTATGGTATATAAAATTTGTGATGAGCGTTTAGAGGGAACTGAAAACACTGTTTTGAGTACATGTTTTTTTTTTATATATAAATGACTTTTTGCACTGC

>Glyma14g06820.7   sequence type=transcript   gene model=Glyma14g06820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTGCTTCCGCCGAGCTTAGGAGAATAGAAGAGGAGCAGGAGGCATCACCATTGCCACAATGGTTAAAGGTCGCCAAGGAGAACGTGTAAGACTCTACGTCAGGGGTTCAATTCTTGGATACAAGAGGTCCAAGTCAAATCAATACCCAAGCACCTCCCTAATCCAGATTGAGAATGTAAACTCTAAGGAAGAAGTTGCGTGGTACTGTGGGAAGCGCATGGCTTACATCTACAAAGCGAAGGTAAAGAAGAACGGAAGCCACTATCGCTGCATTTGGGGTAAGGTCACCAGGCCTCATGGTAACAGTGGTATAGTTCGAGCTAAGTTCAAGTCCAATCTGCCACCTAGGTCAATGGGTGCAAGGGTTAGAGTATTCATGTATCCAAGCAATATATGAGATATTAAGTGTAAAACCTTTCTGCTTGAGCCTACTCCTTTATCCGTGGAGATATGCTCCAATGTAATTGGCTTACAGATCCATCCATTTGTGAAAAGTTGATTGTTATTGTGTTGTGATTTTGCTGTTTTTGCACATAGTAAGATTCTCAGGATTCGTGTGTCGTGGGGCTAGTTTGTCAGAGTATTTGAAAGGAATTTGCATTTTGCGAGTTAAATTTGTGTTTTTCTTTTTTGGTAGCTCTTGAGCAGAATAGTATCTTTGTTTAGGATGGAGAATGAACCCCGTGTTTTTCTTTATTCTCACTGCCATGGTTATTAAGGAGGATTGAGTCTCAATTTTATAAACGGATTTTTCTCCTCACTTGTTGCATTTTCCCGTCCCCTTAAAATTGGAATTGAAGAATTCGAGCTCGCTGTTCTCGGGATAAAAAAATTGGAACTTTTCATCTCCATCTTAAGGAAATGTCTATTGGATTAATTATTATTGGAATGAAGTTAAAGGGATTAAATTGTGATCTCCCGGAAAAGTCAATCGTGTATGGTATATAAAATTTGTGATGAGCGTTTAGAGGGAACTGAAAACACTGTTTTGAGTACATGTTTTTTTTTTATATATAAATGACTTTTTGCACTGC

Coding sequences of Glyma14g06820

Limit To All Plant Sequences

>Glyma14g06820.2   sequence type=CDS   gene model=Glyma14g06820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTAAAGGTCGCCAAGGAGAACGTGTAAGACTCTACGTCAGGGGTTCAATTCTTGGATACAAGAGGTCCAAGTCAAATCAATACCCAAGCACCTCCCTAATCCAGATTGAGAATGTAAACTCTAAGGAAGAAGTTGCGTGGTACTGTGGGAAGCGCATGGCTTACATCTACAAAGCGAAGGTAAAGAAGAACGGAAGCCACTATCGCTGCATTTGGGGTAAGGTCACCAGGCCTCATGGTAACAGTGGTATAGTTCGAGCTAAGTTCAAGTCCAATCTGCCACCTAGGTCAATGGGTGCAAGGGTTAGAGTATTCATGTATCCAAGCAATATATGA

>Glyma14g06820.3   sequence type=CDS   gene model=Glyma14g06820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTAAAGGTCGCCAAGGAGAACGTGTAAGACTCTACGTCAGGGGTTCAATTCTTGGATACAAGAGGTCCAAGTCAAATCAATACCCAAGCACCTCCCTAATCCAGATTGAGAATGTAAACTCTAAGGAAGAAGTTGCGTGGTACTGTGGGAAGCGCATGGCTTACATCTACAAAGCGAAGGTAAAGAAGAACGGAAGCCACTATCGCTGCATTTGGGGTAAGGTCACCAGGCCTCATGGTAACAGTGGTATAGTTCGAGCTAAGTTCAAGTCCAATCTGCCACCTAGGTCAATGGGTGCAAGGGTTAGAGTATTCATGTATCCAAGCAATATATGA

>Glyma14g06820.5   sequence type=CDS   gene model=Glyma14g06820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGAATAGAAGAGGAGCAGGAGGCATCACCATTGCCACAATGGTTAAAGGTCGCCAAGGAGAACGTACTCTACGTCAGGGGTTCAATTCTTGGATACAAGAGGTCCAAGTCAAATCAATACCCAAGCACCTCCCTAATCCAGATTGAGAATGTAAACTCTAAGGAAGAAGTTGCGTGGTACTGTGGGAAGCGCATGGCTTACATCTACAAAGCGAAGGTAAAGAAGAACGGAAGCCACTATCGCTGCATTTGGGGTAAGGTCACCAGGCCTCATGGTAACAGTGGTATAGTTCGAGCTAAGTTCAAGTCCAATCTGCCACCTAGGTCAATGGGTGCAAGGGTTAGAGTATTCATGTATCCAAGCAATATATGA

>Glyma14g06820.6   sequence type=CDS   gene model=Glyma14g06820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTAAAGGTCGCCAAGGAGAACGTGTAAGACTCTACGTCAGGGGTTCAATTCTTGGATACAAGAGGTCCAAGTCAAATCAATACCCAAGCACCTCCCTAATCCAGATTGAGAATGTAAACTCTAAGGAAGAAGTTGCGTGGTACTGTGGGAAGCGCATGGCTTACATCTACAAAGCGAAGGTAAAGAAGAACGGAAGCCACTATCGCTGCATTTGGGGTAAGGTCACCAGGCCTCATGGTAACAGTGGTATAGTTCGAGCTAAGTTCAAGTCCAATCTGCCACCTAGGTCAATGGGTGCAAGGGTTAGAGTATTCATGTATCCAAGCAATATATGA

>Glyma14g06820.7   sequence type=CDS   gene model=Glyma14g06820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTAAAGGTCGCCAAGGAGAACGTGTAAGACTCTACGTCAGGGGTTCAATTCTTGGATACAAGAGGTCCAAGTCAAATCAATACCCAAGCACCTCCCTAATCCAGATTGAGAATGTAAACTCTAAGGAAGAAGTTGCGTGGTACTGTGGGAAGCGCATGGCTTACATCTACAAAGCGAAGGTAAAGAAGAACGGAAGCCACTATCGCTGCATTTGGGGTAAGGTCACCAGGCCTCATGGTAACAGTGGTATAGTTCGAGCTAAGTTCAAGTCCAATCTGCCACCTAGGTCAATGGGTGCAAGGGTTAGAGTATTCATGTATCCAAGCAATATATGA

Predicted protein sequences of Glyma14g06820

Limit To All Plant Sequences

>Glyma14g06820.2   sequence type=predicted peptide   gene model=Glyma14g06820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKGRQGERVRLYVRGSILGYKRSKSNQYPSTSLIQIENVNSKEEVAWYCGKRMAYIYKAKVKKNGSHYRCIWGKVTRPHGNSGIVRAKFKSNLPPRSMGARVRVFMYPSNI*

>Glyma14g06820.3   sequence type=predicted peptide   gene model=Glyma14g06820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKGRQGERVRLYVRGSILGYKRSKSNQYPSTSLIQIENVNSKEEVAWYCGKRMAYIYKAKVKKNGSHYRCIWGKVTRPHGNSGIVRAKFKSNLPPRSMGARVRVFMYPSNI*

>Glyma14g06820.5   sequence type=predicted peptide   gene model=Glyma14g06820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
RIEEEQEASPLPQWLKVAKENVLYVRGSILGYKRSKSNQYPSTSLIQIENVNSKEEVAWYCGKRMAYIYKAKVKKNGSHYRCIWGKVTRPHGNSGIVRAKFKSNLPPRSMGARVRVFMYPSNI*

>Glyma14g06820.6   sequence type=predicted peptide   gene model=Glyma14g06820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKGRQGERVRLYVRGSILGYKRSKSNQYPSTSLIQIENVNSKEEVAWYCGKRMAYIYKAKVKKNGSHYRCIWGKVTRPHGNSGIVRAKFKSNLPPRSMGARVRVFMYPSNI*

>Glyma14g06820.7   sequence type=predicted peptide   gene model=Glyma14g06820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKGRQGERVRLYVRGSILGYKRSKSNQYPSTSLIQIENVNSKEEVAWYCGKRMAYIYKAKVKKNGSHYRCIWGKVTRPHGNSGIVRAKFKSNLPPRSMGARVRVFMYPSNI*

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