Glyma14g06800 - SoyBase

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Report for Sequence Feature Glyma14g06800

Feature Type:	gene_model
Chromosome:	Gm14
Start:	5012984
stop:	5015885
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g06800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G55770	AT	Annotation by Michelle Graham. TAIR10: GATA type zinc finger transcription factor family protein \| chr3:20703799-20705115 FORWARD LENGTH=199	SoyBase	E_val: 6.00E-109	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0048573	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering	SoyBase	N/A	ISS
GO:0051017	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin filament bundle assembly	SoyBase	N/A	ISS
GO:0051049	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0015629	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: actin cytoskeleton	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0051015	GO-mf	Annotation by Michelle Graham. GO Molecular Function: actin filament binding	SoyBase	N/A	ISS
KOG1700	KOG	Regulatory protein MLP and related LIM proteins	JGI		ISS
PTHR24206	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24206:SF66	Panther		JGI		ISS
PF00412	PFAM	LIM domain	JGI		ISS
UniRef100_B7FME7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: LIM domain-containing protein n=1 Tax=Medicago truncatula RepID=B7FME7_MEDTR	SoyBase	E_val: 1.00E-117	ISS
UniRef100_I1M7Y8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M7Y8_SOYBN	SoyBase	E_val: 3.00E-135	ISS

Expression Patterns of Glyma14g06800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g06800 not represented in the dataset	Glyma14g06800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g06800

Paralog	Evidence	Comments
Glyma02g42101	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g06800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g062700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g06800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g06800

Limit To All Plant Sequences

>Glyma14g06800.4   sequence type=transcript   gene model=Glyma14g06800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTAAATTAAAAACCCATATAATTGTTTTTTTTTCACACATTAAAAACCCATATGCATTTCAATACTATAGACATAGATTGATCCAAACCTATGGGATACTTTCTCAAACTTTAGTTGTTGCTTATGGTCCTATGCACTTAATTGGTTTTGGGAGTAGACAAGAGCTGACAGTGGAGGCAGGAAAGATATCTAATATCTATATCCTATCTCCCAAATAGTAGTTTATGGTTAATACTATATTACTTGACACTGGTCATTACTCATCATCATTTGATTTGTTGTTATCAATCAATTTAATATATTCATATCCTTCCACCTGAGTTCTTAGTCCTGAATGTCCTTGTCTGTCTCAGTGTCTCTCTTCACAACCTCACCGATCTGCCATTTCTCACTCATAACAACTTTGTACAATTTGACTCGATATGTTGAAGTTTCTCTGCAGCTAAATTGACCAATCGTTTGGTGCACTTAGATCTAAAAGCTAGAAAGATGTCTTTTATTGGCACTCAACAAAAGTGCGAGGCTTGTGACAAAACAGTGTACCCCGTTGATCAGCTTTCTGCTGATGGCACTGCTTATCACAAAGCATGCTTCAAGTGCTCTCATTGCAAAGGAACCTTGAAGCTCAGCAACTATTCCTCCATGGAAGGTGTTCTATACTGTAAGCCTCATTATGAGCAACTCTTCAAGGAGACAGGATCTTTCAAGAAGAACTTCCAGTCACCTGCTAAGCAAGCTGTCAAAACAACTCCTGAGCTGACAAGGTCTCCTAGTAAAGCTGCTAGCATGTTTTCTGGGACCCAAGAAAAGTGTGCTACATGTGGCAAAACTGCTTATCCTTTGGAGAAGGTAACAGTGGAAGGTCAGGCCTATCACAAATCTTGTTTCAAATGTTCACATGGCAGCTGTCCCATAACTCCATCCAACTATGCAGCCCTGGAGGGCGTTTTGTATTGCAAGCACCATTTTTCCCAGCTTTTTAAGGAGAAAGGGAGCTATAATCATCTTATTAAATCTGCATCAATCAAACGGGAAGCAAACTCTGTTCCACAAGCTTGAGTCATGGTGTTGTCTTTTGTTGTTATTATCATCTTTGGAATAAGTGTTTGTGTTTTTTTCATTTTGATTCTACTTACCATGACAAGTTTCCTTCTTGTTCACTTTATATGTGGGTGTCGCTAGTGTGCAATTTACAGTGTGTGATGTATTTGACCAATGCACATTCAGTAATAATAGTGTGATTTGCAAGATGTCGCGTATCTGAAGTTCATGTATCCTCTCTTTTGAATCCACTGAAATTGTGGTATATCTAATTTAACACCAAATTGTGAAATAC

>Glyma14g06800.5   sequence type=transcript   gene model=Glyma14g06800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCATTTGATTTGTTGTTATCAATCAATTTAATATATTCATATCCTTCCACCTGAGTTCTTAGTCCTGAATGTCCTTGTCTGTCTCAGTGTCTCTCTTCACAACCTCACCGATCTGCCATTTCTCACTCATAACAACTTTGTACAATTTGACTCGATATGTTGAAGTTTCTCTGCAGCTAAATTGACCAATCGTAAGATATTTATCTTTCACTTTGCCAACTGGGGTGGTTTTCAATTCATGTAGCAGCTGAGGTTATATTGTAAAGGTCTAATTAAGAAGCTACATTGTATTGGTTTGGGCATTTGGAATTGGTGGTGGTAGGTTTGGTGCACTTAGATCTAAAAGCTAGAAAGATGTCTTTTATTGGCACTCAACAAAAGTGCGAGGCTTGTGACAAAACAGTGTACCCCGTTGATCAGCTTTCTGCTGATGGCACTGCTTATCACAAAGCATGCTTCAAGTGCTCTCATTGCAAAGGAACCTTGAAGCTCAGCAACTATTCCTCCATGGAAGGTGTTCTATACTGTAAGCCTCATTATGAGCAACTCTTCAAGGAGACAGGATCTTTCAAGAAGAACTTCCAGTCACCTGCTAAGCAAGCTGTCAAAACAACTCCTGAGCTGACAAGGTCTCCTAGTAAAGCTGCTAGCATGTTTTCTGGGACCCAAGAAAAGTGTGCTACATGTGGCAAAACTGCTTATCCTTTGGAGAAGGTAACAGTGGAAGGTCAGGCCTATCACAAATCTTGTTTCAAATGTTCACATGGCAGCTGTCCCATAACTCCATCCAACTATGCAGCCCTGGAGGGCGTTTTGTATTGCAAGCACCATTTTTCCCAGCTTTTTAAGGAGAAAGGGAGCTATAATCATCTTATTAAATCTGCATCAATCAAACGGGAAGCAAACTCTGTTCCACAAGCTTGAGTCATGGTGTTGTCTTTTGTTGTTATTATCATCTTTGGAATAAGTGTTTGTGTTTTTTTCATTTTGATTCTACTTACCATGACAAGTTTCCTTCTTGTTCACTTTATATGTGGGTGTCGCTAGTGTGCAATTTACAGTGTGTGATGTATTTGACCAATGCACATTCAGTAATAATAGTGTGATTTGCAAGATGT

Coding sequences of Glyma14g06800

Limit To All Plant Sequences

>Glyma14g06800.3   sequence type=CDS   gene model=Glyma14g06800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTTTATTGGCACTCAACAAAAGTGCGAGGCTTGTGACAAAACAGTGTACCCCGTTGATCAGCTTTCTGCTGATGGCACTGCTTATCACAAAGCATGCTTCAAGTGCTCTCATTGCAAAGGAACCTTGAAGCTCAGCAACTATTCCTCCATGGAAGGTGTTCTATACTGTAAGCCTCATTATGAGCAACTCTTCAAGGAGACAGGATCTTTCAAGAAGAACTTCCAGTCACCTGCTAAGCAAGCTGTCAAAACAACTCCTGAGCTGACAAGGTCTCCTAGTAAAGCTGCTAGCATGTTTTCTGGGACCCAAGAAAAGTGTGCTACATGTGGCAAAACTGCTTATCCTTTGGAGAAGGTAACAGTGGAAGGTCAGGCCTATCACAAATCTTGTTTCAAATGTTCACATGGCAGCTGTCCCATAACTCCATCCAACTATGCAGCCCTGGAGGGCGTTTTGTATTGCAAGCACCATTTTTCCCAGCTTTTTAAGGAGAAAGGGAGCTATAATCATCTTATTAAATCTGCATCAATCAAACGGGAAGCAAACTCTGTTCCACAAGCTTGA

>Glyma14g06800.4   sequence type=CDS   gene model=Glyma14g06800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTTTATTGGCACTCAACAAAAGTGCGAGGCTTGTGACAAAACAGTGTACCCCGTTGATCAGCTTTCTGCTGATGGCACTGCTTATCACAAAGCATGCTTCAAGTGCTCTCATTGCAAAGGAACCTTGAAGCTCAGCAACTATTCCTCCATGGAAGGTGTTCTATACTGTAAGCCTCATTATGAGCAACTCTTCAAGGAGACAGGATCTTTCAAGAAGAACTTCCAGTCACCTGCTAAGCAAGCTGTCAAAACAACTCCTGAGCTGACAAGGTCTCCTAGTAAAGCTGCTAGCATGTTTTCTGGGACCCAAGAAAAGTGTGCTACATGTGGCAAAACTGCTTATCCTTTGGAGAAGGTAACAGTGGAAGGTCAGGCCTATCACAAATCTTGTTTCAAATGTTCACATGGCAGCTGTCCCATAACTCCATCCAACTATGCAGCCCTGGAGGGCGTTTTGTATTGCAAGCACCATTTTTCCCAGCTTTTTAAGGAGAAAGGGAGCTATAATCATCTTATTAAATCTGCATCAATCAAACGGGAAGCAAACTCTGTTCCACAAGCTTGA

>Glyma14g06800.5   sequence type=CDS   gene model=Glyma14g06800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTTTATTGGCACTCAACAAAAGTGCGAGGCTTGTGACAAAACAGTGTACCCCGTTGATCAGCTTTCTGCTGATGGCACTGCTTATCACAAAGCATGCTTCAAGTGCTCTCATTGCAAAGGAACCTTGAAGCTCAGCAACTATTCCTCCATGGAAGGTGTTCTATACTGTAAGCCTCATTATGAGCAACTCTTCAAGGAGACAGGATCTTTCAAGAAGAACTTCCAGTCACCTGCTAAGCAAGCTGTCAAAACAACTCCTGAGCTGACAAGGTCTCCTAGTAAAGCTGCTAGCATGTTTTCTGGGACCCAAGAAAAGTGTGCTACATGTGGCAAAACTGCTTATCCTTTGGAGAAGGTAACAGTGGAAGGTCAGGCCTATCACAAATCTTGTTTCAAATGTTCACATGGCAGCTGTCCCATAACTCCATCCAACTATGCAGCCCTGGAGGGCGTTTTGTATTGCAAGCACCATTTTTCCCAGCTTTTTAAGGAGAAAGGGAGCTATAATCATCTTATTAAATCTGCATCAATCAAACGGGAAGCAAACTCTGTTCCACAAGCTTGA

Predicted protein sequences of Glyma14g06800

Limit To All Plant Sequences

>Glyma14g06800.3   sequence type=predicted peptide   gene model=Glyma14g06800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFIGTQQKCEACDKTVYPVDQLSADGTAYHKACFKCSHCKGTLKLSNYSSMEGVLYCKPHYEQLFKETGSFKKNFQSPAKQAVKTTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVEGQAYHKSCFKCSHGSCPITPSNYAALEGVLYCKHHFSQLFKEKGSYNHLIKSASIKREANSVPQA*

>Glyma14g06800.4   sequence type=predicted peptide   gene model=Glyma14g06800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFIGTQQKCEACDKTVYPVDQLSADGTAYHKACFKCSHCKGTLKLSNYSSMEGVLYCKPHYEQLFKETGSFKKNFQSPAKQAVKTTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVEGQAYHKSCFKCSHGSCPITPSNYAALEGVLYCKHHFSQLFKEKGSYNHLIKSASIKREANSVPQA*

>Glyma14g06800.5   sequence type=predicted peptide   gene model=Glyma14g06800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFIGTQQKCEACDKTVYPVDQLSADGTAYHKACFKCSHCKGTLKLSNYSSMEGVLYCKPHYEQLFKETGSFKKNFQSPAKQAVKTTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVEGQAYHKSCFKCSHGSCPITPSNYAALEGVLYCKHHFSQLFKEKGSYNHLIKSASIKREANSVPQA*

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