Glyma14g06680 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma14g06680

Feature Type:	gene_model
Chromosome:	Gm14
Start:	4894106
stop:	4896207
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g06680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G00430	AT	Annotation by Michelle Graham. TAIR10: plasma membrane intrinsic protein 1;4 \| chr4:186569-187531 REVERSE LENGTH=219	SoyBase	E_val: 7.00E-124	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006826	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron ion transport	SoyBase	N/A	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0010106	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0015250	GO-mf	Annotation by Michelle Graham. GO Molecular Function: water channel activity	SoyBase	N/A	ISS
KOG0223	KOG	Aquaporin (major intrinsic protein family)	JGI		ISS
PTHR19139	Panther	AQUAPORIN TRANSPORTER	JGI		ISS
PTHR19139:SF55	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00230	PFAM	Major intrinsic protein	JGI		ISS
UniRef100_I1M7W9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M7W9_SOYBN	SoyBase	E_val: 9.00E-160	ISS
UniRef100_Q946J9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aquaporin PIP11 n=1 Tax=Medicago truncatula RepID=Q946J9_MEDTR	SoyBase	E_val: 2.00E-136	ISS

Expression Patterns of Glyma14g06680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g06680

Paralog	Evidence	Comments
Glyma02g42220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g06680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g061500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g06680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g06680

Limit To All Plant Sequences

>Glyma14g06680.6   sequence type=transcript   gene model=Glyma14g06680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAAATTCAACATATTACGCCTCGGGACCCACCTCCCACTACACCTCACCCTCACTTCTATTAACTCGAACACATTCGGGTTATAAATCCGCAACCCTCCTTCTCACTCACTCACTCACTCACTCACTCACTCGCAAGCAAAAAGAAAGAATCCCAGGCGAGGAGAAAGATGGAGGGGAAGGAGCAGGATGTGTCGTTGGGAGCGAACAAGTTCCCCGAGAGACAGCCAATTGGGACGGCGGCGCAGAGCCAAGACGACGGCAAGGACTACCAGGAGCCGGCGCCGGCGCCGCTGGTTGACCCGACGGAGTTTACGTCATGGTCGTTTTACAGAGCAGGGATAGCAGAGTTTGTGGCCACTTTTCTGTTTCTCTACATCACTGTCTTAACCGTTATGGGAGTCGCCGGGGCTAAGTCTAAGTGTAGTACCGTTGGGATTCAAGGAATCGCTTGGGCCTTCGGTGGCATGATCTTCGCCCTCGTTTACTGCACCGCTGGCATCTCAGGGGGACACATAAACCCGGCGGTGACATTTGGGCTGTTTTTGGCGAGGAAGTTGTCGTTGCCCAGGGCGATTTTCTACATCGTGATGCAATGCTTGGGTGCTATTTGTGGCGCTGGCGTGGTGAAGGGTTTCGAGGGGAAAACAAAATACGGTGCGTTGAATGGTGGTGCCAACTTTGTTGCCCCTGGTTACACCAAGGGTGATGGTCTTGGTGCTGAGATTGTTGGCACTTTCATCCTTGTTTACACCGTTTTCTCCGCCACCGATGCCAAACGTAGCGCCAGAGACTCCCACGTCCCCATTTTGGCACCCTTGCCAATTGGGTTCGCTGTGTTCTTGGTTCACTTGGCAACCATCCCCATCACCGGAACTGGTATCAACCCTGCTCGTAGTCTTGGTGCTGCTATCATCTTCAACAAGGACCTTGGTTGGGATGAACACTGGATCTTCTGGGTGGGACCATTCATCGGTGCAGCTCTTGCAGCACTCTACCACCAGGTCGTAATCAGGGCCATTCCCTTCAAGTCCAAGTGATTCAATCAAACGGTTCATGCTTAATCAAGTTGGGAACAACAACAACAACAAAAATCAAGCCAATGTTTGTGGGTTTTGGTTTCATTTCATTAAGATGATCTGTTTATCTCTTTTCTTCTTTTTAAAATTTAAAGTCTTTGTATTTTGTATGTAAAGATGTAAAATTATGATTATTAGGTGGTGCATGTGTCGCGTCATGGGCCAATGTTATCCTCTGCTTTTAAGTTGGAAGAGGCCCAACTCATGTGTGATGTACGGCTGTGATTGTGTAATTTAATTTGCAAAATCAAAAATAACACCAGAGTCATATATATGCATCTCTTTATTTTCTCTGGCCCCCACCATGTCTTCTATGTAATATTTGTTGCCCTCTTCCCCCAAGTATATGACAAGGTTGGGTTTCTTTTTATCCACGCCTGTGCCCGTTATCACTTGCTATGGATAATTGAAATCCGGTGAGAGTGAGAAGTGGGGTTGGCTTGGTGGGTGGGTGGGTGGATGAATGATGTCTCTTGCTTAATATGGGACCACTTTTCTTCCTCAATAATGCACATATTCTAGTGTTGTCCATTTAATAATGATTTGTGATCATAGCCTTGGG

>Glyma14g06680.7   sequence type=transcript   gene model=Glyma14g06680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAAATTCAACATATTACGCCTCGGGACCCACCTCCCACTACACCTCACCCTCACTTCTATTAACTCGAACACATTCGGGTTATAAATCCGCAACCCTCCTTCTCACTCACTCACTCACTCACTCACTCACTCGCAAGCAAAAAGAAAGAATCCCAGGCGAGGAGAAAGATGGAGGGGAAGGAGCAGGATGTGTCGTTGGGAGCGAACAAGTTCCCCGAGAGACAGCCAATTGGGACGGCGGCGCAGAGCCAAGACGACGGCAAGGACTACCAGGAGCCGGCGCCGGCGCCGCTGGTTGACCCGACGGAGTTTACGTCATGGTCGTTTTACAGAGCAGGGATAGCAGAGTTTGTGGCCACTTTTCTGTTTCTCTACATCACTGTCTTAACCGTTATGGGAGTCGCCGGGGCTAAGTCTAAGTGTAGTACCGTTGGGATTCAAGGAATCGCTTGGGCCTTCGGTGGCATGATCTTCGCCCTCGTTTACTGCACCGCTGGCATCTCAGGGGGACACATAAACCCGGCGGTGACATTTGGGCTGTTTTTGGCGAGGAAGTTGTCGTTGCCCAGGGCGATTTTCTACATCGTGATGCAATGCTTGGGTGCTATTTGTGGCGCTGGCGTGGTGAAGGGTTTCGAGGGGAAAACAAAATACGGTGCGTTGAATGGTGGTGCCAACTTTGTTGCCCCTGGTTACACCAAGGGTGATGGTCTTGGTGCTGAGATTGTTGGCACTTTCATCCTTGTTTACACCGTTTTCTCCGCCACCGATGCCAAACGTAGCGCCAGAGACTCCCACGTCCCCATTTTGGCACCCTTGCCAATTGGGTTCGCTGTGTTCTTGGTTCACTTGGCAACCATCCCCATCACCGGAACTGGTATCAACCCTGCTCGTAGTCTTGGTGCTGCTATCATCTTCAACAAGGACCTTGGTTGGGATGAACACGTAAGTTGTTAATTAATTCATTTATTTCATAATTGGTAAAAAAAAAAATCATTGAACCAATTTTAGATTTTTCGGGAAAACGAATCTGGAGCGTTTGATCTCTGACGCTTATTGTTTGTCGTTTTCCGTGCAGTGGATCTTCTGGGTGGGACCATTCATCGGTGCAGCTCTTGCAGCACTCTACCACCAGGTCGTAATCAGGGCCATTCCCTTCAAGTCCAAGTGATTCAATCAAACGGTTCATGCTTAATCAAGTTGGGAACAACAACAACAACAAAAATCAAGCCAATGTTTGTGGGTTTTGGTTTCATTTCATTAAGATGATCTGTTTATCTCTTTTCTTCTTTTTAAAATTTAAAGTCTTTGTATTTTGTATGTAAAGATGTAAAATTATGATTATTAGGTGGTGCATGTGTCGCGTCATGGGCCAATGTTATCCTCTGCTTTTAAGTTGGAAGAGGCCCAACTCATGTGTGATGTACGGCTGTGATTGTGTAATTTAATTTGCAAAATCAAAAATAACACCAGAGTCATATATATGCATCTCTTTATTTTCTCTGGCCCCCACCATGTCTTCTATGTAATATTTGTTGCCCTCTTCCCCCAAGTATATGACAAGGTTGGGTTTCTTTTTATCCACGCCTGTGCCCGTTATCACTTGCTATGGATAATTGAAATCCGGTGAGAGTGAGAAGTGGGGTTGGCTTGGTGGGTGGGTGGGTGGATGAATGATGTCTCTTGCTTAATATGGGACCACTTTTCTTCCTCAATAATGCACATATTCTAGTGTTGTCCATTTAATAATGATTTGTGATCATAGCCTTGGG

Coding sequences of Glyma14g06680

Limit To All Plant Sequences

>Glyma14g06680.2   sequence type=CDS   gene model=Glyma14g06680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGGGAAGGAGCAGGATGTGTCGTTGGGAGCGAACAAGTTCCCCGAGAGACAGCCAATTGGGACGGCGGCGCAGAGCCAAGACGACGGCAAGGACTACCAGGAGCCGGCGCCGGCGCCGCTGGTTGACCCGACGGAGTTTACGTCATGGTCGTTTTACAGAGCAGGGATAGCAGAGTTTGTGGCCACTTTTCTGTTTCTCTACATCACTGTCTTAACCGTTATGGGAGTCGCCGGGGCTAAGTCTAAGTGTAGTACCGTTGGGATTCAAGGAATCGCTTGGGCCTTCGGTGGCATGATCTTCGCCCTCGTTTACTGCACCGCTGGCATCTCAGGGGGACACATAAACCCGGCGGTGACATTTGGGCTGTTTTTGGCGAGGAAGTTGTCGTTGCCCAGGGCGATTTTCTACATCGTGATGCAATGCTTGGGTGCTATTTGTGGCGCTGGCGTGGTGAAGGGTTTCGAGGGGAAAACAAAATACGGTGCGTTGAATGGTGGTGCCAACTTTGTTGCCCCTGGTTACACCAAGGGTGATGGTCTTGGTGCTGAGATTGTTGGCACTTTCATCCTTGTTTACACCGTTTTCTCCGCCACCGATGCCAAACGTAGCGCCAGAGACTCCCACGTCCCCGTAAGCCTCCCTCCCTTCCGAAATTCCCTTTAA

>Glyma14g06680.6   sequence type=CDS   gene model=Glyma14g06680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGTCGCCGGGGCTAAGTCTAAGTGTAGTACCGTTGGGATTCAAGGAATCGCTTGGGCCTTCGGTGGCATGATCTTCGCCCTCGTTTACTGCACCGCTGGCATCTCAGGGGGACACATAAACCCGGCGGTGACATTTGGGCTGTTTTTGGCGAGGAAGTTGTCGTTGCCCAGGGCGATTTTCTACATCGTGATGCAATGCTTGGGTGCTATTTGTGGCGCTGGCGTGGTGAAGGGTTTCGAGGGGAAAACAAAATACGGTGCGTTGAATGGTGGTGCCAACTTTGTTGCCCCTGGTTACACCAAGGGTGATGGTCTTGGTGCTGAGATTGTTGGCACTTTCATCCTTGTTTACACCGTTTTCTCCGCCACCGATGCCAAACGTAGCGCCAGAGACTCCCACGTCCCCATTTTGGCACCCTTGCCAATTGGGTTCGCTGTGTTCTTGGTTCACTTGGCAACCATCCCCATCACCGGAACTGGTATCAACCCTGCTCGTAGTCTTGGTGCTGCTATCATCTTCAACAAGGACCTTGGTTGGGATGAACACTGGATCTTCTGGGTGGGACCATTCATCGGTGCAGCTCTTGCAGCACTCTACCACCAGGTCGTAATCAGGGCCATTCCCTTCAAGTCCAAGTGA

>Glyma14g06680.7   sequence type=CDS   gene model=Glyma14g06680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGTCGCCGGGGCTAAGTCTAAGTGTAGTACCGTTGGGATTCAAGGAATCGCTTGGGCCTTCGGTGGCATGATCTTCGCCCTCGTTTACTGCACCGCTGGCATCTCAGGGGGACACATAAACCCGGCGGTGACATTTGGGCTGTTTTTGGCGAGGAAGTTGTCGTTGCCCAGGGCGATTTTCTACATCGTGATGCAATGCTTGGGTGCTATTTGTGGCGCTGGCGTGGTGAAGGGTTTCGAGGGGAAAACAAAATACGGTGCGTTGAATGGTGGTGCCAACTTTGTTGCCCCTGGTTACACCAAGGGTGATGGTCTTGGTGCTGAGATTGTTGGCACTTTCATCCTTGTTTACACCGTTTTCTCCGCCACCGATGCCAAACGTAGCGCCAGAGACTCCCACGTCCCCATTTTGGCACCCTTGCCAATTGGGTTCGCTGTGTTCTTGGTTCACTTGGCAACCATCCCCATCACCGGAACTGGTATCAACCCTGCTCGTAGTCTTGGTGCTGCTATCATCTTCAACAAGGACCTTGGTTGGGATGAACACGTAAGTTGTTAA

Predicted protein sequences of Glyma14g06680

Limit To All Plant Sequences

>Glyma14g06680.2   sequence type=predicted peptide   gene model=Glyma14g06680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGKEQDVSLGANKFPERQPIGTAAQSQDDGKDYQEPAPAPLVDPTEFTSWSFYRAGIAEFVATFLFLYITVLTVMGVAGAKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLPRAIFYIVMQCLGAICGAGVVKGFEGKTKYGALNGGANFVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPVSLPPFRNSL*

>Glyma14g06680.6   sequence type=predicted peptide   gene model=Glyma14g06680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVAGAKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLPRAIFYIVMQCLGAICGAGVVKGFEGKTKYGALNGGANFVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDLGWDEHWIFWVGPFIGAALAALYHQVVIRAIPFKSK*

>Glyma14g06680.7   sequence type=predicted peptide   gene model=Glyma14g06680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVAGAKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLPRAIFYIVMQCLGAICGAGVVKGFEGKTKYGALNGGANFVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDLGWDEHVSC*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain