Glyma14g06670 - SoyBase

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Report for Sequence Feature Glyma14g06670

Feature Type:	gene_model
Chromosome:	Gm14
Start:	4880165
stop:	4885506
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g06670

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G55830	AT	Annotation by Michelle Graham. TAIR10: Nucleotide-diphospho-sugar transferases superfamily protein \| chr3:20715101-20717133 FORWARD LENGTH=334	SoyBase	E_val: 1.00E-163	ISS
GO:0009617	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to bacterium	SoyBase	N/A	ISS
GO:0010087	GO-bp	Annotation by Michelle Graham. GO Biological Process: phloem or xylem histogenesis	SoyBase	N/A	ISS
GO:0045087	GO-bp	Annotation by Michelle Graham. GO Biological Process: innate immune response	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0031227	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intrinsic to endoplasmic reticulum membrane	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
GO:0035251	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-glucosyltransferase activity	SoyBase	N/A	ISS
PTHR11062	Panther	EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERASE)-RELATED	JGI		ISS
PTHR11062:SF23	Panther		JGI		ISS
PF09258	PFAM	Glycosyl transferase family 64 domain	JGI		ISS
UniRef100_G7KGW5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Exostosin-2 n=1 Tax=Medicago truncatula RepID=G7KGW5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1M7W5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M7W5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g06670

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g06670 not represented in the dataset	Glyma14g06670 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g06670

Paralog	Evidence	Comments
Glyma02g42230	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g06670 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g061400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g06670

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g06670

Limit To All Plant Sequences

>Glyma14g06670.2   sequence type=transcript   gene model=Glyma14g06670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATGGACTGTTTGATATTACGAGATTCATCATGATGAGCTTTCTAAGTCACAGGATCATCTAGAATTGGAAAACGGGCGAACCAAACCGAATTTTGGGTTTGGTGGTTTAGATTATTAACCTAGAACCTAGCTCAAAGGAATGTTTAATTCGAGTACTAACAACTCCGCCCTTCTTTATCATATACCCTTGATTTATAACCTAGTGGGATGAAGTTTGGGGATTGTTTTTTTCATTCAAGTTTTGTTTTCTTAAAGAGTAATGAGTTTATGTTGCTTGTGATGTTAGAGGACTCATTGTCTTTTTATATTTTGTTCACAGGAAAGGGTATTCTATAGTAATGAACACATGGAAGAGATATGATCTTCTAAAGCAGTCCATCAAGCATTATTCATCATGTCCTCGACTTGAATCAGTACATATTGTGTGGAGTGAACCTGATCCTCCATCGGATATTCTTTTAAAATTTCTGCACCACGTTGTAAAGTCCAAGTCTAAAGATGGAAGATATGTGAAATTGAGGTTTGATATCAACAAGGAAGACAGTTTGAACAATAGATTTAAAGAAATTAAGGATTTGGAGACAGATGCTGTCTTTTCTATTGATGATGATGTTATATTTCCTTGCTCTACGGTGGAATTTGCATTTGATGTTTGGCAAAGTGCACCTGATACAATGGTTGGATTTGTACCTCGTGTCCATTGGGTGGATTCATTGGAAGGTAATGACAGCAAATTTATATATGGCGGATGGTGGTCTGTGTGGTGGACGGGTACATATAGCATGGTGCTTTCCAAGGCAGCGTTCTTTCACAAAAAGTATTTCAATATCTACACAAATGAGATGCCATCATCAATTAGAGAATATGTAACCAAGAACAGGAATTGTGAAGATATTGCAATGTCTTTCCTTGTTGCAAATGCTACCGGTGCACCCCCCATATGGGTTAAAGGTAAAATATTAGAGATTGGATCGACTGGAATCAGTAGTTTGGGAGGTCACAGTGAAAGAAGAACAGAATGCGTCAACAGATTTGTTGCCGCGTATGGGCGGATGCCCTTGGTATCTACTTCAGTTAAGGCTGTTGATAGCCGCAATATCTGGTTTTGGTGACGCTGGAATTTTGATTTTCCTTGCATTTCTAGAAATTCTACTGCCGTCCTTTTATTAGCTAGTTGAGTTACTCAATTCACGTTAGTCACAGTTGTATAATATATTGGATCTTATACTCCATTCATGCGTTTTGCCGCTAATCGATCAAATTCCTTAGGTTGATTTCTTGTATTAGATATGTAATGCAAGGCAGCATCGTGTGGTGCTTTTTCCCCCTCAAAATATTAAGAATTTCATTGTAGAATATTATTAAAGGGTTATTACACCCTAAGAGATGAAGCTCTACCTGTGATATAGTTATTATTTATATTATTAATAGTCCACTAGCCCAATAGATAACGCTATTGTGTTGGAAGAATG

>Glyma14g06670.3   sequence type=transcript   gene model=Glyma14g06670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAGAATTAATCAAATTTTTTTTCCAAGATCTTGCAGCATCCATGGTTGGGTGTAGGAACGAAATGTGTGAAGGGAAGCATGAAGCACCACTCTCAGGAAACATCAGAGTCGCGAAAGGACAATCTGATAAATCAAGCGGCGCAGAAAGCGTCCACGTGTCACGCAGCACCTGAGTTTTGTGATCGAGGCGATTGATACACACCCCAACGTGATGTCGGAACCCAACCAATGGAAAGAAAAAAAAAAACACGAATCCATTTGGTTTCTGTCAAATATGATCTGCGACTGAGACAGAGACGCACGACGACAAAGGCGAACAATCAGTACGCTAAAGCTATAACGTTTCAACTTTCACTTTCACACGTCAAAGAAAGATAGCCATTATTAAGATTTTAAGCGATTCTCGTTCGGCTCGGGATGGCTGGCCGCTGAACCGGACCGGTTCGGCTTGGAGAGATCTTGTTGGGCTCGGAAACACGCATTTGCGGCGGTGATGAGAGGGAGCTGCTGCTGCTGGAACCGTCGGACAGAGCAGCGGTTCCGCCTCCTCGCGATCTCCACCGTTAAATCACTCAAGATCAAGCTTCTCCTCTTTTGCTGCGTCGCCTTCACGCTTCTCGCCTTTTCCACCAGCGCTTCTTCCTTCGTCCTATGGATCAACAACCAAACGCCGCCGCCTCCGCCACCTCGCTTCCCCGATTCCGGGAAAGGGTATTCTATAGTAATGAACACATGGAAGAGATATGATCTTCTAAAGCAGTCCATCAAGCATTATTCATCATGTCCTCGACTTGAATCAGTACATATTGTGTGGAGTGAACCTGATCCTCCATCGGATATTCTTTTAAAATTTCTGCACCACGTTGTAAAGTCCAAGTCTAAAGATGGAAGATATGTGAAATTGAGGTTTGATATCAACAAGGAAGACAGTTTGAACAATAGATTTAAAGAAATTAAGGATTTGGAGACAGATGCTGTCTTTTCTATTGATGATGATGTTATATTTCCTTGCTCTACGGTGGAATTTGCATTTGATGTTTGGCAAAGTGCACCTGATACAATGGTTGGATTTGTACCTCGTGTCCATTGGGTGGATTCATTGGAAGGTAATGACAGCAAATTTATATATGGCGGATGGTGGTCTGTGTGGTGGACGGGTACATATAGCATGGTGCTTTCCAAGGCAGCGTTCTTTCACAAAAAGTATTTCAATATCTACACAAATGAGATGCCATCATCAATTAGAGAATATGAATTGTGAAGATATTGCAATGTCTTTCCTTGTTGCAAATGCTACCGGTGCACCCCCCATATGGGTTAAAGGTAAAATATTAGAGATTGGATCGACTGGAATCAGTAGTTTGGGAGGTCACAGTGAAAGAAGAACAGAATGCGTCAACAGATTTGTTGCCGCGTATGGGCGGATGCCCTTGGTATCTACTTCAGTTAAGGCTGTTGATAGCCGCAATATCTGGTTTTGGTGACGCTGGAATTTTGATTTTCCTTGCATTTCTAGAAATTCTACTGCCGTCCTTTTATTAGCTAGTTGAGTTACTCAATTCACGTTAGTCACAGTTGTATAATATATTGGATCTTATACTCCATTCATGCGTTTTGCCGCTAATCGATCAAATTCCTTAGGTTGATTTCTTGTATTAGATATGTAATGCAAGGCAGCATCGTGTGGTGCTTTTTCCCCCTCAAAATATTAAGAATTTCATTGTAGAATATTATTAAAGGGTTATTACACCCTAAGAGATGAAGCTCTACCTGTGATATAGTTATTATTTATATTATTAATAGTCCACTAGCCCAATAGATAACGCTATTGTGTTGGAAGAATG

Coding sequences of Glyma14g06670

Limit To All Plant Sequences

>Glyma14g06670.1   sequence type=CDS   gene model=Glyma14g06670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGGGAGCTGCTGCTGCTGGAACCGTCGGACAGAGCAGCGGTTCCGCCTCCTCGCGATCTCCACCGTTAAATCACTCAAGATCAAGCTTCTCCTCTTTTGCTGCGTCGCCTTCACGCTTCTCGCCTTTTCCACCAGCGCTTCTTCCTTCGTCCTATGGATCAACAACCAAACGCCGCCGCCTCCGCCACCTCGCTTCCCCGATTCCGGGAAAGGGTATTCTATAGTAATGAACACATGGAAGAGATATGATCTTCTAAAGCAGTCCATCAAGCATTATTCATCATGTCCTCGACTTGAATCAGTACATATTGTGTGGAGTGAACCTGATCCTCCATCGGATATTCTTTTAAAATTTCTGCACCACGTTGTAAAGTCCAAGTCTAAAGATGGAAGATATGTGAAATTGAGGTTTGATATCAACAAGGAAGACAGTTTGAACAATAGATTTAAAGAAATTAAGGATTTGGAGACAGATGCTGTCTTTTCTATTGATGATGATGTTATATTTCCTTGCTCTACGGTGGAATTTGCATTTGATGTTTGGCAAAGTGCACCTGATACAATGGTTGGATTTGTACCTCGTGTCCATTGGGTGGATTCATTGGAAGGTAATGACAGCAAATTTATATATGGCGGATGGTGGTCTGTGTGGTGGACGGGTACATATAGCATGGTGCTTTCCAAGGCAGCGTTCTTTCACAAAAAGTATTTCAATATCTACACAAATGAGATGCCATCATCAATTAGAGAATATGTAACCAAGAACAGGAATTGTGAAGATATTGCAATGTCTTTCCTTGTTGCAAATGCTACCGGTGCACCCCCCATATGGGTTAAAGGTAAAATATTAGAGATTGGATCGACTGGAATCAGTAGTTTGGGAGGTCACAGTGAAAGAAGAACAGAATGCGTCAACAGATTTGTTGCCGCGTATGGGCGGATGCCCTTGGTATCTACTTCAGTTAAGGCTGTTGATAGCCGCAATATCTGGTTTTGGTGA

>Glyma14g06670.2   sequence type=CDS   gene model=Glyma14g06670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACACATGGAAGAGATATGATCTTCTAAAGCAGTCCATCAAGCATTATTCATCATGTCCTCGACTTGAATCAGTACATATTGTGTGGAGTGAACCTGATCCTCCATCGGATATTCTTTTAAAATTTCTGCACCACGTTGTAAAGTCCAAGTCTAAAGATGGAAGATATGTGAAATTGAGGTTTGATATCAACAAGGAAGACAGTTTGAACAATAGATTTAAAGAAATTAAGGATTTGGAGACAGATGCTGTCTTTTCTATTGATGATGATGTTATATTTCCTTGCTCTACGGTGGAATTTGCATTTGATGTTTGGCAAAGTGCACCTGATACAATGGTTGGATTTGTACCTCGTGTCCATTGGGTGGATTCATTGGAAGGTAATGACAGCAAATTTATATATGGCGGATGGTGGTCTGTGTGGTGGACGGGTACATATAGCATGGTGCTTTCCAAGGCAGCGTTCTTTCACAAAAAGTATTTCAATATCTACACAAATGAGATGCCATCATCAATTAGAGAATATGTAACCAAGAACAGGAATTGTGAAGATATTGCAATGTCTTTCCTTGTTGCAAATGCTACCGGTGCACCCCCCATATGGGTTAAAGGTAAAATATTAGAGATTGGATCGACTGGAATCAGTAGTTTGGGAGGTCACAGTGAAAGAAGAACAGAATGCGTCAACAGATTTGTTGCCGCGTATGGGCGGATGCCCTTGGTATCTACTTCAGTTAAGGCTGTTGATAGCCGCAATATCTGGTTTTGGTGA

>Glyma14g06670.3   sequence type=CDS   gene model=Glyma14g06670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGGGAGCTGCTGCTGCTGGAACCGTCGGACAGAGCAGCGGTTCCGCCTCCTCGCGATCTCCACCGTTAAATCACTCAAGATCAAGCTTCTCCTCTTTTGCTGCGTCGCCTTCACGCTTCTCGCCTTTTCCACCAGCGCTTCTTCCTTCGTCCTATGGATCAACAACCAAACGCCGCCGCCTCCGCCACCTCGCTTCCCCGATTCCGGGAAAGGGTATTCTATAGTAATGAACACATGGAAGAGATATGATCTTCTAAAGCAGTCCATCAAGCATTATTCATCATGTCCTCGACTTGAATCAGTACATATTGTGTGGAGTGAACCTGATCCTCCATCGGATATTCTTTTAAAATTTCTGCACCACGTTGTAAAGTCCAAGTCTAAAGATGGAAGATATGTGAAATTGAGGTTTGATATCAACAAGGAAGACAGTTTGAACAATAGATTTAAAGAAATTAAGGATTTGGAGACAGATGCTGTCTTTTCTATTGATGATGATGTTATATTTCCTTGCTCTACGGTGGAATTTGCATTTGATGTTTGGCAAAGTGCACCTGATACAATGGTTGGATTTGTACCTCGTGTCCATTGGGTGGATTCATTGGAAGGTAATGACAGCAAATTTATATATGGCGGATGGTGGTCTGTGTGGTGGACGGGTACATATAGCATGGTGCTTTCCAAGGCAGCGTTCTTTCACAAAAAGTATTTCAATATCTACACAAATGAGATGCCATCATCAATTAGAGAATATGAATTGTGA

Predicted protein sequences of Glyma14g06670

Limit To All Plant Sequences

>Glyma14g06670.1   sequence type=predicted peptide   gene model=Glyma14g06670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRGSCCCWNRRTEQRFRLLAISTVKSLKIKLLLFCCVAFTLLAFSTSASSFVLWINNQTPPPPPPRFPDSGKGYSIVMNTWKRYDLLKQSIKHYSSCPRLESVHIVWSEPDPPSDILLKFLHHVVKSKSKDGRYVKLRFDINKEDSLNNRFKEIKDLETDAVFSIDDDVIFPCSTVEFAFDVWQSAPDTMVGFVPRVHWVDSLEGNDSKFIYGGWWSVWWTGTYSMVLSKAAFFHKKYFNIYTNEMPSSIREYVTKNRNCEDIAMSFLVANATGAPPIWVKGKILEIGSTGISSLGGHSERRTECVNRFVAAYGRMPLVSTSVKAVDSRNIWFW*

>Glyma14g06670.2   sequence type=predicted peptide   gene model=Glyma14g06670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNTWKRYDLLKQSIKHYSSCPRLESVHIVWSEPDPPSDILLKFLHHVVKSKSKDGRYVKLRFDINKEDSLNNRFKEIKDLETDAVFSIDDDVIFPCSTVEFAFDVWQSAPDTMVGFVPRVHWVDSLEGNDSKFIYGGWWSVWWTGTYSMVLSKAAFFHKKYFNIYTNEMPSSIREYVTKNRNCEDIAMSFLVANATGAPPIWVKGKILEIGSTGISSLGGHSERRTECVNRFVAAYGRMPLVSTSVKAVDSRNIWFW*

>Glyma14g06670.3   sequence type=predicted peptide   gene model=Glyma14g06670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRGSCCCWNRRTEQRFRLLAISTVKSLKIKLLLFCCVAFTLLAFSTSASSFVLWINNQTPPPPPPRFPDSGKGYSIVMNTWKRYDLLKQSIKHYSSCPRLESVHIVWSEPDPPSDILLKFLHHVVKSKSKDGRYVKLRFDINKEDSLNNRFKEIKDLETDAVFSIDDDVIFPCSTVEFAFDVWQSAPDTMVGFVPRVHWVDSLEGNDSKFIYGGWWSVWWTGTYSMVLSKAAFFHKKYFNIYTNEMPSSIREYEL*

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