Glyma14g06610 - SoyBase

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Report for Sequence Feature Glyma14g06610

Feature Type:	gene_model
Chromosome:	Gm14
Start:	4849454
stop:	4855035
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g06610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G05760	AT	Annotation by Michelle Graham. TAIR10: syntaxin of plants 31 \| chr5:1729111-1730903 REVERSE LENGTH=336	SoyBase	E_val: 2.00E-143	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0006891	GO-bp	Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0009504	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell plate	SoyBase	N/A	ISS
GO:0043231	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular membrane-bounded organelle	SoyBase	N/A	ISS
GO:0005484	GO-mf	Annotation by Michelle Graham. GO Molecular Function: SNAP receptor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG0812	KOG	SNARE protein SED5/Syntaxin 5	JGI		ISS
PTHR19957	Panther	SYNTAXIN	JGI		ISS
PTHR19957:SF3	Panther	SYNTAXIN	JGI		ISS
PF00804	PFAM	Syntaxin	JGI		ISS
PF05739	PFAM	SNARE domain	JGI		ISS
UniRef100_G7K8M8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Syntaxin-31 n=1 Tax=Medicago truncatula RepID=G7K8M8_MEDTR	SoyBase	E_val: 5.00E-179	ISS
UniRef100_I1M7V7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M7V7_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma14g06610

Locus	Gene Symbol	Protein Name
	SYP38	syntaxin

Expression Patterns of Glyma14g06610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g06610 not represented in the dataset	Glyma14g06610 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g06610

Paralog	Evidence	Comments
Glyma02g42280	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g06610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g064300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g06610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g06610

Limit To All Plant Sequences

>Glyma14g06610.2   sequence type=transcript   gene model=Glyma14g06610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGAAATGAGTCATAGTGTGGGTCTCGGTGTGAAATAATAGCCCAATAAGCCAGGCCCAAATAAAATGTGCATGCGAGTGGGGCCCAATTAGTTAAGGTGTCCACTGAACTGAAATGGTGTCCTTCATGGGATCTTGGAATTGAAACGAACGGGACGTGTCTGTCTCCGATGGCTTCCTCATACCGTGACCGCACGTCGGAGTTCCGGTTATTATTGGAGACTCTGAAGAAGATCGGAAGTCCGGTGCAACCCGAGAATGCTCCTTCGACCTCTCATGGCGAGTCGTATTCGAGATCCGAATTCAACCGAAAGGCCTCGCGTATCGGGTTGGGGATCCACGAGACCTCGCAGAAGATCGCGAGGCTCACGCAGCTGGCGAGGAAATCGTCCATGTTCAACGATCCCGCAGTGGAGATTCAGGAGCTGACTGTTCTGATCAAGAACGAGATCACGGCGCTCAACTCGGCTCTCTTCGATTTGCAAACCGTTCAGAACACGGATATGGCTGACGGCGGTTACTCGCAGGATACGATTGTGCATTCCACCGCGGTTTGTGATGACTTGAAGAGCAAACTCATGGGAGCCACCAAACACCTTCAAGATGTCTTAGCTGCTAGGACAGAGAATATAAAGGCTCACGAGAACAGGAAGCAGATATTTTCCAAGAACGCATCAAGAGAGAATCCTTTGCAGCATCAGCCAAAGCCAACTACTGAGCCGCCACCTTGGTCAAATTCATCGAATGCATCTGAGAGTTTGCATCAAGAATTGGCATTACCGTCAAATGGAGCTCCTGTTGGCAATCAACTAAGACGAAGGTTGGCTGTGGACAGCACTCCATCCCAGCAAATGGAAATGTCTATGGTACAGCAGGTTGTGCCTCGGCATGACAACTATGCTCAAAGTCGGGCAACTGCTCTGCACAATGTGGAATCTACTATCACTGAGCTTAGTGGGATTTTCTCACATTTAGCTACAATGGTTGCCCATCAAGGGGAGCTTGCTATCAGGTTTTTCTTGTTCCACCCATATACTCGACAGACACTAGTATGTTACTACAGTTCACTAAATTTTCCTCCACTTATGGTGTTAGTGAATTGAATTACAATACTATTGTATGCAAAGGCTTGGATGTTCATGTGTTCTAGCAATTAGCTTTAAATCTGCCTAACTTGCATGGGCAGGATTGATGACAATATGGATGAGTCATCGGCAAATGTTGAAGGAGCTCACAGTTCTTTATTGAGGCATCTCAACCGAATATCATCAAATAGGTGGCTTCTAATAAAGATATTTGTCATTCTGATACTTTTCCTCATGATCTTCATATTCTTTGTCGCCTAATATACTTCAATATGCTAATCATGGAAGTTTCACTTCGTGGCTTACTTGGATTTGTCTTCGTTCTTCTGTGGAGGCAAAAATACAAGAGCAGCTAAATGTGCGGATGTATTCTATTTGAATGTAGATAGAGCTCCGTCATCTGTAAACATTTTACAATATATTCTTTTGTTTGGCAATCATTATAGGTGTTATTAAAATTTTGTTGGCATGTATGCCCCAAATTAAGCACATTGAGTAAGAAATATACGAGTGTTTGGTAAACTGATATAGAGATTCACAATATTTTTGTAGTTTCTAAGATACAAATAGAGGGATACAGAAATATCTCGTTTCTAGATACTGTAGTGGACAAGGTACCAAATTAATGGTAGCATACGAGAAGTCCTTTGTTCGCTTACGTGATAATGTAAGCTTTTTGATATTGTAATATCAAAATTGATTGTTTTTAAAGTTTTATGTGAGAGAATTTTTTTAACAACTAAAATTGTTTTTTTAACCATTTTCA

Coding sequences of Glyma14g06610

Limit To All Plant Sequences

>Glyma14g06610.1   sequence type=CDS   gene model=Glyma14g06610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCTCATACCGTGACCGCACGTCGGAGTTCCGGTTATTATTGGAGACTCTGAAGAAGATCGGAAGTCCGGTGCAACCCGAGAATGCTCCTTCGACCTCTCATGGCGAGTCGTATTCGAGATCCGAATTCAACCGAAAGGCCTCGCGTATCGGGTTGGGGATCCACGAGACCTCGCAGAAGATCGCGAGGCTCACGCAGCTGGCGAGGAAATCGTCCATGTTCAACGATCCCGCAGTGGAGATTCAGGAGCTGACTGTTCTGATCAAGAACGAGATCACGGCGCTCAACTCGGCTCTCTTCGATTTGCAAACCGTTCAGAACACGGATATGGCTGACGGCGGTTACTCGCAGGATACGATTGTGCATTCCACCGCGGTTTGTGATGACTTGAAGAGCAAACTCATGGGAGCCACCAAACACCTTCAAGATGTCTTAGCTGCTAGGACAGAGAATATAAAGGCTCACGAGAACAGGAAGCAGATATTTTCCAAGAACGCATCAAGAGAGAATCCTTTGCAGCATCAGCCAAAGCCAACTACTGAGCCGCCACCTTGGTCAAATTCATCGAATGCATCTGAGAGTTTGCATCAAGAATTGGCATTACCGTCAAATGGAGCTCCTGTTGGCAATCAACTAAGACGAAGGTTGGCTGTGGACAGCACTCCATCCCAGCAAATGGAAATGTCTATGGTACAGCAGGTTGTGCCTCGGCATGACAACTATGCTCAAAGTCGGGCAACTGCTCTGCACAATGTGGAATCTACTATCACTGAGCTTAGTGGGATTTTCTCACATTTAGCTACAATGGTTGCCCATCAAGGGGAGCTTGCTATCAGGATTGATGACAATATGGATGAGTCATCGGCAAATGTTGAAGGAGCTCACAGTTCTTTATTGAGGCATCTCAACCGAATATCATCAAATAGGTGGCTTCTAATAAAGATATTTGTCATTCTGATACTTTTCCTCATGATCTTCATATTCTTTGTCGCCTAA

>Glyma14g06610.2   sequence type=CDS   gene model=Glyma14g06610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCTCATACCGTGACCGCACGTCGGAGTTCCGGTTATTATTGGAGACTCTGAAGAAGATCGGAAGTCCGGTGCAACCCGAGAATGCTCCTTCGACCTCTCATGGCGAGTCGTATTCGAGATCCGAATTCAACCGAAAGGCCTCGCGTATCGGGTTGGGGATCCACGAGACCTCGCAGAAGATCGCGAGGCTCACGCAGCTGGCGAGGAAATCGTCCATGTTCAACGATCCCGCAGTGGAGATTCAGGAGCTGACTGTTCTGATCAAGAACGAGATCACGGCGCTCAACTCGGCTCTCTTCGATTTGCAAACCGTTCAGAACACGGATATGGCTGACGGCGGTTACTCGCAGGATACGATTGTGCATTCCACCGCGGTTTGTGATGACTTGAAGAGCAAACTCATGGGAGCCACCAAACACCTTCAAGATGTCTTAGCTGCTAGGACAGAGAATATAAAGGCTCACGAGAACAGGAAGCAGATATTTTCCAAGAACGCATCAAGAGAGAATCCTTTGCAGCATCAGCCAAAGCCAACTACTGAGCCGCCACCTTGGTCAAATTCATCGAATGCATCTGAGAGTTTGCATCAAGAATTGGCATTACCGTCAAATGGAGCTCCTGTTGGCAATCAACTAAGACGAAGGTTGGCTGTGGACAGCACTCCATCCCAGCAAATGGAAATGTCTATGGTACAGCAGGTTGTGCCTCGGCATGACAACTATGCTCAAAGTCGGGCAACTGCTCTGCACAATGTGGAATCTACTATCACTGAGCTTAGTGGGATTTTCTCACATTTAGCTACAATGGTTGCCCATCAAGGGGAGCTTGCTATCAGGTTTTTCTTGTTCCACCCATATACTCGACAGACACTAGTATGTTACTACAGTTCACTAAATTTTCCTCCACTTATGGTGTTAGTGAATTGA

Predicted protein sequences of Glyma14g06610

Limit To All Plant Sequences

>Glyma14g06610.1   sequence type=predicted peptide   gene model=Glyma14g06610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSYRDRTSEFRLLLETLKKIGSPVQPENAPSTSHGESYSRSEFNRKASRIGLGIHETSQKIARLTQLARKSSMFNDPAVEIQELTVLIKNEITALNSALFDLQTVQNTDMADGGYSQDTIVHSTAVCDDLKSKLMGATKHLQDVLAARTENIKAHENRKQIFSKNASRENPLQHQPKPTTEPPPWSNSSNASESLHQELALPSNGAPVGNQLRRRLAVDSTPSQQMEMSMVQQVVPRHDNYAQSRATALHNVESTITELSGIFSHLATMVAHQGELAIRIDDNMDESSANVEGAHSSLLRHLNRISSNRWLLIKIFVILILFLMIFIFFVA*

>Glyma14g06610.2   sequence type=predicted peptide   gene model=Glyma14g06610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSYRDRTSEFRLLLETLKKIGSPVQPENAPSTSHGESYSRSEFNRKASRIGLGIHETSQKIARLTQLARKSSMFNDPAVEIQELTVLIKNEITALNSALFDLQTVQNTDMADGGYSQDTIVHSTAVCDDLKSKLMGATKHLQDVLAARTENIKAHENRKQIFSKNASRENPLQHQPKPTTEPPPWSNSSNASESLHQELALPSNGAPVGNQLRRRLAVDSTPSQQMEMSMVQQVVPRHDNYAQSRATALHNVESTITELSGIFSHLATMVAHQGELAIRFFLFHPYTRQTLVCYYSSLNFPPLMVLVN*

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