Glyma14g06560 - SoyBase

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Report for Sequence Feature Glyma14g06560

Feature Type:	gene_model
Chromosome:	Gm14
Start:	4791286
stop:	4793489
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g06560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G05710	AT	Annotation by Michelle Graham. TAIR10: Pleckstrin homology (PH) domain superfamily protein \| chr5:1715943-1716377 FORWARD LENGTH=144	SoyBase	E_val: 5.00E-87	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005543	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phospholipid binding	SoyBase	N/A	ISS
PTHR22903	Panther	PLEKHH PROTEIN	JGI		ISS
PF00169	PFAM	PH domain	JGI		ISS
UniRef100_C6T5R3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T5R3_SOYBN	SoyBase	E_val: 5.00E-103	ISS
UniRef100_G7KGZ7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pleckstrin homology domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KGZ7_MEDTR	SoyBase	E_val: 1.00E-86	ISS

Expression Patterns of Glyma14g06560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g06560 not represented in the dataset	Glyma14g06560 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g06560

Paralog	Evidence	Comments
Glyma02g42330	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g06560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g060200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g06560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g06560

Limit To All Plant Sequences

>Glyma14g06560.3   sequence type=transcript   gene model=Glyma14g06560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACTCTCATTACACGAATAGGGATTAAGACAAAAATAATAAAAGAATACTTACGAGCTAAAAAAAGAAAAAAAGTGGGGGAGAGAGAGAATCTTGTGCACACGGTAAGGGCAAAGCCAGCAACGCAATGTCGTGAGTGAGTTGGTTTTTTCTTTGGTTCTCCTGAGCTGTGTTTATTCTCTTTCTCTGCCCTCTCATCTTCGAGCTCCGATGGCGAGCCTGTGGCGCGCGGCAACCGGCATGACGGACAACGCCACCGATTACGACGGCGTCGAGTTCTGGTCGAACCCCGAGCGGACCGGCTGGCTCACCAAGCAGGGCGAGTACATCAAGACCTGGCGCCGCCGCTGGTTCGTCCTCAAGCAAGGCAAGCTCTTCTGGTTCAAGGACTCCGCCGTCACGCGTGCGTCTCGTCCACGCGGCGTGGTCCCCGTCGCCACGTGCCTCACCGTCAAAGGCGCCGAAGACATCCTCAACAAGCCCAACGCCTTCGAGCTCTCCACGCGCTCCGACACCATGTACTTCATCGCCGACTCCGAGAAGGAGAAGGAGGATTGGATCAACTCTATCGGCCGCTCCATCGTCCAGCACTCCAGATCCGTCACCGATTCCGAGATCATCGATTACGATAACAACTCCTCCAAGCGCTGACAACCACGCGCTCTCAATCCACGCGCCTCTTTCGGGCTTTGTGGATTTTGTTTTGGATCAATCTTTTCGATTATGTTGCTTCTCACTTTCAACTATAGTTACCTGAACAGAGTGGGAGATTTTCGACGATGTAATTAAGTTTCTGGAGTTATGAGCTGAACAATTTTCTTCCAATTGGAAACGCTCGATTGTAGATTATTATAGTTTGGGTTCGGTTAAAAACTAACTTCACTCCATAAATCTAATTCAATGTCTTTGTTTTCTTGAAATTGAGTTCGTATGAGGTTTGATTATATGATTATCAGTGAAAGGTGAAGAGCGTAATTTGAGTTTCAATTGTTTAGCTATATTATTCACGAGCAAATCCCATTGCAGGGCGTTTAAATGCAGCTGTGCTCGGAAAAAGTGTGAACGCGCAAATGGTTACTTTGATCTCTTTATTCTTTTCTCTCTTAAATCGAATCGCGTGAGAATGGTTTAAGACAGAAACTGTTTGCATTTGAATCGCAATGTGGGAATTGAATTGGCGCAGACAACAATAAGCTGCATAAAACAAGTAATGGTGAATGGATCCAAACGAGAATCTTAAGGTTAACGCAACTAATTTTCGAAACAGTTGTTTCTTGAAAAACAGTTTTTGGATAAGTGCACGTAACTCCAATTCAACATCTTTTATACGAGTGGTGAATTCTGCATAACTTGCAACTCAATTTTAGCAAAATGGTCAGGATCATGAGAAGACTCCAGCGCTTGAACTTTTCCATGTCGATGCATTCAGCCGTGAAACTCTTTGATTTTTTTATTTTTGGTGAATTCATGAAACTCTTTGATGCCCCGTGTGTTTCAAGATTCAAAACCCCTTTACAGCAATTGGTCTTTCAATATGGTGAAGAGATCCTTTGTACACAGAACCAATGCTTCCAGTGCCTACTAAATTGGATAAGATCAAATTAATAAACAAATTTCATATAAATGTTTACCCAAGTATTTTGTTATCAAATACCTTGAATGGTGTGGTAGGAAAAAATCTCATGTTAAGTAATTAAATCAGAAAAATGGTGTAGTGTGGCAGGGCAGTTCTGCATAATTAGCATAGGTTGTTGCATAAAAAGTTCATTTGGAAGTTATTCTCAACCTTTTAGGTGCTTTAATGTATAGTTTGCCGAAAGATCTGTTGTAAGTGCTAAATTTGGGATGTAAATAGAATTGAAACATGGTTCAAGGGTGTCCAAACATCTAAAATGAGAACAGCCGTGTTAGAATTAAAATTATGCAGAATTGGTATGCGTTACAGCACTTAGGTATAGATTGCCCTACAATATGCTATAGGTGATCGATTATTCATATTATGTCTTTGTTATGTTTTTATAATTTTAATTTATATGTCTAATCCAAATTTGTAA

>Glyma14g06560.4   sequence type=transcript   gene model=Glyma14g06560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAAAAAGTGGGGGAGAGAGAGAATCTTGTGCACACGGTAAGGGCAAAGCCAGCAACGCAATGTCGTGAGTGAGTTGGTTTTTTCTTTGGTTCTCCTGAGCTGTGTTTATTCTCTTTCTCTGCCCTCTCATCTTCGAGCTCCGATGGCGAGCCTGTGGCGCGCGGCAACCGGCATGACGGACAACGCCACCGATTACGACGGCGTCGAGTTCTGGTCGAACCCCGAGCGGACCGGCTGGCTCACCAAGCAGGGCGAGTACATCAAGACCTGGCGCCGCCGCTGGTTCGTCCTCAAGCAAGGCAAGCTCTTCTGGTTCAAGGACTCCGCCGTCACGCGTGCGTCTCGTCCACGCGGCGTGGTCCCCGTCGCCACGTGCCTCACCGTCAAAGGCGCCGAAGACATCCTCAACAAGCCCAACGCCTTCGAGCTCTCCACGCGCTCCGACACCATGTACTTCATCGCCGACTCCGAGAAGGAGAAGGAGGATTGGATCAACTCTATCGGCCGCTCCATCGTCCAGCACTCCAGATCCGTCACCGATTCCGAGATCATCGATTACGATAACAACTCCTCCAAGCGCTGACAACCACGCGCTCTCAATCCACGCGCCTCTTTCGGGCGTTTAAATGCAGCTGTGCTCGGAAAAAGTGTGAACGCGCAAATGGTTACTTTGATCTCTTTATTCTTTTCTCTCTTAAATCGAATCGCGTGAGAATGGTTTAAGACAGAAACTGTTTGCATTTGAATCGCAATGTGGGAATTGAATTGGCGCAGACAACAATAAGCTGCATAAAACAAGTAATGGTGAATGGATCCAAACGAGAATCTTAAGGTTAACGCAACTAATTTTCGAAACAGTTGTTTCTTGAAAAACAGTTTTTGGATAAGTGCACGTAACTCCAATTCAACATCTTTTATACGAGTGGTGAATTCTGCATAACTTGCAACTCAATTTTAGCAAAATGGTCAGGATCATGAGAAGACTCCAGCGCTTGAACTTTTCCATGTCGATGCATTCAGCCGTGAAACTCTTTGATTTTTTTATTTTTGGTGAATTCATGAAACTCTTTGATGCCCCGTGTGTTTCAAGATTCAAAACCCCTTTACAGCAATTGGTCTTTCAATATGGTGAAGAGATCCTTTGTACACAGAACCAATGCTTCCAGTGCCTACTAAATTGGATAAGATCAAATTAATAAACAAATTTCATATAAATGTTTACCCAAGTATTTTGTTATCAAATACCTTGAATGGTGTGGTAGGAAAAAATCTCATGTTAAGTAATTAAATCAGAAAAATGGTGTAGTGTGGCAGGGCAGTTCTGCATAATTAGCATAGGTTGTTGCATAAAAAGTTCATTTGGAAGTTATTCTCAACCTTTTAGGTGCTTTAATGTATAGTTTGCCGAAAGATCTGTTGTAAGTGCTAAATTTGGGATGTAAATAGAATTGAAACATGGTTCAAGGGTGTCCAAACATCTAAAATGAGAACAGCCGTGTTAGAATTAAAATTATGCAGAATTGGTATGCGTTACAGCACTTAGGTATAGATTGCCCTACAATATGCTATAGGTGATCGATTATTCATATTATGTCTTTGTTATGTTTTTATAATTTTAATTTATATGTCTAATCCAAATTTGTAA

Coding sequences of Glyma14g06560

Limit To All Plant Sequences

>Glyma14g06560.1   sequence type=CDS   gene model=Glyma14g06560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAGCCTGTGGCGCGCGGCAACCGGCATGACGGACAACGCCACCGATTACGACGGCGTCGAGTTCTGGTCGAACCCCGAGCGGACCGGCTGGCTCACCAAGCAGGGCGAGTACATCAAGACCTGGCGCCGCCGCTGGTTCGTCCTCAAGCAAGGCAAGCTCTTCTGGTTCAAGGACTCCGCCGTCACGCGTGCGTCTCGTCCACGCGGCGTGGTCCCCGTCGCCACGTGCCTCACCGTCAAAGGCGCCGAAGACATCCTCAACAAGCCCAACGCCTTCGAGCTCTCCACGCGCTCCGACACCATGTACTTCATCGCCGACTCCGAGAAGGAGAAGGAGGATTGGATCAACTCTATCGGCCGCTCCATCGTCCAGCACTCCAGATCCGTCACCGATTCCGAGATCATCGATTACGATAACAACTCCTCCAAGCGCTGA

>Glyma14g06560.3   sequence type=CDS   gene model=Glyma14g06560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAGCCTGTGGCGCGCGGCAACCGGCATGACGGACAACGCCACCGATTACGACGGCGTCGAGTTCTGGTCGAACCCCGAGCGGACCGGCTGGCTCACCAAGCAGGGCGAGTACATCAAGACCTGGCGCCGCCGCTGGTTCGTCCTCAAGCAAGGCAAGCTCTTCTGGTTCAAGGACTCCGCCGTCACGCGTGCGTCTCGTCCACGCGGCGTGGTCCCCGTCGCCACGTGCCTCACCGTCAAAGGCGCCGAAGACATCCTCAACAAGCCCAACGCCTTCGAGCTCTCCACGCGCTCCGACACCATGTACTTCATCGCCGACTCCGAGAAGGAGAAGGAGGATTGGATCAACTCTATCGGCCGCTCCATCGTCCAGCACTCCAGATCCGTCACCGATTCCGAGATCATCGATTACGATAACAACTCCTCCAAGCGCTGA

>Glyma14g06560.4   sequence type=CDS   gene model=Glyma14g06560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAGCCTGTGGCGCGCGGCAACCGGCATGACGGACAACGCCACCGATTACGACGGCGTCGAGTTCTGGTCGAACCCCGAGCGGACCGGCTGGCTCACCAAGCAGGGCGAGTACATCAAGACCTGGCGCCGCCGCTGGTTCGTCCTCAAGCAAGGCAAGCTCTTCTGGTTCAAGGACTCCGCCGTCACGCGTGCGTCTCGTCCACGCGGCGTGGTCCCCGTCGCCACGTGCCTCACCGTCAAAGGCGCCGAAGACATCCTCAACAAGCCCAACGCCTTCGAGCTCTCCACGCGCTCCGACACCATGTACTTCATCGCCGACTCCGAGAAGGAGAAGGAGGATTGGATCAACTCTATCGGCCGCTCCATCGTCCAGCACTCCAGATCCGTCACCGATTCCGAGATCATCGATTACGATAACAACTCCTCCAAGCGCTGA

Predicted protein sequences of Glyma14g06560

Limit To All Plant Sequences

>Glyma14g06560.1   sequence type=predicted peptide   gene model=Glyma14g06560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLWRAATGMTDNATDYDGVEFWSNPERTGWLTKQGEYIKTWRRRWFVLKQGKLFWFKDSAVTRASRPRGVVPVATCLTVKGAEDILNKPNAFELSTRSDTMYFIADSEKEKEDWINSIGRSIVQHSRSVTDSEIIDYDNNSSKR*

>Glyma14g06560.3   sequence type=predicted peptide   gene model=Glyma14g06560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLWRAATGMTDNATDYDGVEFWSNPERTGWLTKQGEYIKTWRRRWFVLKQGKLFWFKDSAVTRASRPRGVVPVATCLTVKGAEDILNKPNAFELSTRSDTMYFIADSEKEKEDWINSIGRSIVQHSRSVTDSEIIDYDNNSSKR*

>Glyma14g06560.4   sequence type=predicted peptide   gene model=Glyma14g06560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLWRAATGMTDNATDYDGVEFWSNPERTGWLTKQGEYIKTWRRRWFVLKQGKLFWFKDSAVTRASRPRGVVPVATCLTVKGAEDILNKPNAFELSTRSDTMYFIADSEKEKEDWINSIGRSIVQHSRSVTDSEIIDYDNNSSKR*

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