Glyma14g06430 - SoyBase

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Report for Sequence Feature Glyma14g06430

Feature Type:	gene_model
Chromosome:	Gm14
Start:	4686389
stop:	4690384
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g06430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G55960	AT	Annotation by Michelle Graham. TAIR10: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein \| chr3:20760797-20762892 REVERSE LENGTH=305	SoyBase	E_val: 8.00E-146	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016791	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatase activity	SoyBase	N/A	ISS
KOG1605	KOG	TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation)	JGI		ISS
PTHR12210	Panther	NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED	JGI		ISS
PTHR12210:SF5	Panther	PLASMA MEMBRANE SODIUM RESPONSE PROTEIN	JGI		ISS
PF03031	PFAM	NLI interacting factor-like phosphatase	JGI		ISS
UniRef100_G7KH15	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CTD small phosphatase-like protein n=1 Tax=Medicago truncatula RepID=G7KH15_MEDTR	SoyBase	E_val: 4.00E-165	ISS
UniRef100_I1M7T4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1M7T4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g06430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g06430

Paralog	Evidence	Comments
Glyma02g42450	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g06430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g059000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g06430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g06430

Limit To All Plant Sequences

>Glyma14g06430.1   sequence type=CDS   gene model=Glyma14g06430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAGTGTACTCGCCTCGGACTCAGCAAGTGTGGAGGGCACTGTTGAGTTGGTTGGCCTTCTTCTTTCAGATCTTCTTCCAGATTATAAGAGCCTTAGGTCACTACCCTCTACTCTCTTTCTCTTCTAATTCTTCTTCTTCTTCAAACGCTTCTTCCTCTTCCTCTTCCTTCAAACCTCTTCCCTCCGTTGAGATTGCTGAACACGATTCGCCTCCTCCCTCCGCCCTCGAAATCTCACCACTTGATTATTCCCCCGCCGATCATCCCGTCCCAAAACTCACGGTTGTGCTGGACTTAGATGAAACACTGGTATGTGCATATGAGACATCAAGTTTGCCAGCTGCTCTACGGACTCAAGCAATCGAAGGTGGTTTGAATTGGTTTGAGCTGGAATGTGTATCGATAGACAAGGAAGGAGAAGGCAAAAAAATCAATTATGTTACAGTATTTGAACGCCCTGGGTTGAAGGAATTTTTAAAGCAACTCAGTGAATTTGCTGACATGGTGCTGTTTACAGCTGGTCTTGAAGGCTATGCTAGACCCCTTGTTGACAGAATAGATGTGGAAAATCGATTCAGTCTACGACTTTATCGGCCCTCAACAATTAGCACGGAATATCGGGAGCATGTCAAGGATCTTACCTGCATCTCAAAGGATCTTTGTCGCATTGTTATTGTAGACAATAATCCTTTCAGCTTTGTATTGCAACCGGTGAATGGAATTCCGTGCATTCCATTTTCTGCTGGGCAACCACATGACACCCAGCTTCTAGATGTCATTCTTCCACTTCTCAAGCAACTTTCTGAGCAGAATGATGTAAGACCTTTCCTCTATGAAAAGTTCCACATGCCTGATTGGTTCCAGAAACAAGGGATTCCAGCTTCCAGTTGGACTTTGTAG

Predicted protein sequences of Glyma14g06430

Limit To All Plant Sequences

>Glyma14g06430.1   sequence type=predicted peptide   gene model=Glyma14g06430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GVYSPRTQQVWRALLSWLAFFFQIFFQIIRALGHYPLLSFSSNSSSSSNASSSSSSFKPLPSVEIAEHDSPPPSALEISPLDYSPADHPVPKLTVVLDLDETLVCAYETSSLPAALRTQAIEGGLNWFELECVSIDKEGEGKKINYVTVFERPGLKEFLKQLSEFADMVLFTAGLEGYARPLVDRIDVENRFSLRLYRPSTISTEYREHVKDLTCISKDLCRIVIVDNNPFSFVLQPVNGIPCIPFSAGQPHDTQLLDVILPLLKQLSEQNDVRPFLYEKFHMPDWFQKQGIPASSWTL*

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