Glyma14g06380 - SoyBase

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Report for Sequence Feature Glyma14g06380

Feature Type:	gene_model
Chromosome:	Gm14
Start:	4632783
stop:	4636149
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g06380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G11150	AT	Annotation by Michelle Graham. TAIR10: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein \| chr3:3492986-3494599 REVERSE LENGTH=371	SoyBase	E_val: 6.00E-71	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG0143	KOG	Iron/ascorbate family oxidoreductases	JGI		ISS
PTHR10209	Panther	FE(II)/ ASCORBATE OXIDASE SUPERFAMILY	JGI		ISS
PTHR10209:SF55	Panther	OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEI	JGI		ISS
UniRef100_G7K254	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Gibberellin 2-beta-dioxygenase n=1 Tax=Medicago truncatula RepID=G7K254_MEDTR	SoyBase	E_val: 3.00E-103	ISS
UniRef100_I1M7S8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M7S8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g06380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g06380

Paralog	Evidence	Comments
Glyma02g42490	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g06380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g058600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g06380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g06380

Limit To All Plant Sequences

>Glyma14g06380.2   sequence type=CDS   gene model=Glyma14g06380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCTTCAGCTCAAGTGCCAAACCTCTTCGGCAGTGCCACCTCAGCTCTGCCGCCAACCCCGGCGGCGCACCACGACAACATCATGTCCTCCTCCGACGCCGCCGACGCGCTCTCCTGCCTCCTCCACCGCCTCCCGCCCACGCTCTCCCTTCCCACGCGCCTCCCCTCGCCTTCCTCCGCAGCCGCCACGTCTCCCCCCTCCCTCTCCCTAAACGACGTATTCTCCTGCGTTTCAAAACTCGGTTACGCGCAACTCACCGATCACTCAGTCCCCTCCGAACTCGCCAACTCGGCCGAGTCGGAAGCGCTTGCCCTCTTTGACCTTTCCAAAGAACAGAAGAACTCTCTCTTTCCCAAAAACTGGCCTCTCGGATACGGCGGCGACGACGAAGACGAAGACGAGCTCGCCGAGTCGTTCCGCTTCGACTCGGCGTGTTCGACCGAGTCGAACGAGTTGGCACTCTTTTCCCTGCGCAAGACTTGGGGTGTGAGAATCCGCTTGGGGATGACCCGAACCGGTTCTGTTCGGTTCTGTGGGTTTCGGAGTCTCTGTCCGGGAACAAATCGGTACCAGATAAGGAATCTGAAATACTCATTGCTGTCGGATTCGGGATGGGTTTCTGTGCTGCCACACGTGGACTCGATTTTGGTCACTGTTGGTGACATTGCTCAGATGTGGAGCAATGGCAAGTTAAAGAAAGTGAGAGGCAGACCAATGGCCACAGTGGGAGATGAAAATGGTTCACGCTGCATAACAATGTCATTGCTGATAACTCTTCCAACAGATAGCAGAGTGGCTCCACTCCTTCCCAAGGCAACCTGCAACAAGGAACAAAAGGAAGAAGAAGTTGATGAAGAAAGCAATGATGGTGGTGAAGAACTAGAGAAGAGGGTGTTCAACTCTTTTGATTTTGAGGACTATGCTTGGAGAGTGTACCATGAACGCATCATTTTCAAAGATCCATTGGATAGGTACCGTGTTGCTTAG

Predicted protein sequences of Glyma14g06380

Limit To All Plant Sequences

>Glyma14g06380.2   sequence type=predicted peptide   gene model=Glyma14g06380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSAQVPNLFGSATSALPPTPAAHHDNIMSSSDAADALSCLLHRLPPTLSLPTRLPSPSSAAATSPPSLSLNDVFSCVSKLGYAQLTDHSVPSELANSAESEALALFDLSKEQKNSLFPKNWPLGYGGDDEDEDELAESFRFDSACSTESNELALFSLRKTWGVRIRLGMTRTGSVRFCGFRSLCPGTNRYQIRNLKYSLLSDSGWVSVLPHVDSILVTVGDIAQMWSNGKLKKVRGRPMATVGDENGSRCITMSLLITLPTDSRVAPLLPKATCNKEQKEEEVDEESNDGGEELEKRVFNSFDFEDYAWRVYHERIIFKDPLDRYRVA*

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