Glyma14g06270 - SoyBase

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Report for Sequence Feature Glyma14g06270

Feature Type:	gene_model
Chromosome:	Gm14
Start:	4519559
stop:	4521656
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g06270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G11090	AT	Annotation by Michelle Graham. TAIR10: LOB domain-containing protein 21 \| chr3:3475036-3475533 FORWARD LENGTH=165	SoyBase	E_val: 6.00E-64	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PF03195	PFAM	Protein of unknown function DUF260	JGI		ISS
UniRef100_G7K270	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: LOB domain-containing protein n=1 Tax=Medicago truncatula RepID=G7K270_MEDTR	SoyBase	E_val: 1.00E-96	ISS
UniRef100_I1M7R7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M7R7_SOYBN	SoyBase	E_val: 4.00E-132	ISS

Expression Patterns of Glyma14g06270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g06270

Paralog	Evidence	Comments
Glyma02g43220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g06270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g057600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g06270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g06270

Limit To All Plant Sequences

>Glyma14g06270.1   sequence type=CDS   gene model=Glyma14g06270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGGTTATGAGCCACGTTCAAGCTCTTCTTGTGCAGCTTGCAAGTTCTTGAAGAGAAGGTGCATACCCAATTGCATATTTGCACCTTACTTTCGCTCTGACGAGTGCAAGAAATTCGCCAAGGTGCACAAGGTGTTCGGGGCAAGCAATGTGAGCAAGATCCTCGTTGAGGTTCCTGAGGAACAGAGAGAGGATACGGTGAATTCGCTTGCTTATGAGGCGGAAGCACGGCTTCGGGACCCGGTTTATGGATGCATTGGTGCCATAGCTCTGCTGCAAAGGAAGATGGTGGAGCTTCAACATGACCTTGCCATTGCTAAGGACCGTCTTGCTCGTTATACTGCTGCTGCTACTACTGCTACTGCTACTACCACCACTTCTGATGCCTTGATTAATGGCCATGTTAGTTTGCCACCCTTCCCTGATTTTTTCACTTGTGCTGATAATTTCAATAATGACAACTTCTGTCACACCTCTTCGTCTCAATCATCATTCACCAGACATGAAACGGTGGATGATTTCATTCAAATCCCATATATATTTTGA

Predicted protein sequences of Glyma14g06270

Limit To All Plant Sequences

>Glyma14g06270.1   sequence type=predicted peptide   gene model=Glyma14g06270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKGYEPRSSSSCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILVEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIAKDRLARYTAAATTATATTTTSDALINGHVSLPPFPDFFTCADNFNNDNFCHTSSSQSSFTRHETVDDFIQIPYIF*

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